Factsheet for PGSC0003DMT400018400

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 5
cytosol 2
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074330.2.1	Tomato	cytosol	94.92	97.67
PGSC0003DMT400030589	Potato	extracellular	73.73	73.73
PGSC0003DMT400030553	Potato	cytosol	52.26	57.28
Bra018636.1-P	Field mustard	cytosol	50.0	55.31
CDX93573	Canola	cytosol	49.44	55.03
AT1G08310.2	Thale cress	cytosol	47.74	53.14
Bra030720.1-P	Field mustard	nucleus	42.66	51.89
CDY31156	Canola	cytosol	47.18	50.76
PGSC0003DMT400019164	Potato	extracellular, golgi	44.35	46.18
GSMUA_Achr10P...	Banana	cytosol	11.02	45.88
CDY30542	Canola	mitochondrion	48.87	44.94
CDY32828	Canola	nucleus	48.31	41.01
PGSC0003DMT400061630	Potato	endoplasmic reticulum, extracellular, golgi	40.96	40.85
CDX77121	Canola	mitochondrion	24.01	39.72
CDX95073	Canola	golgi, vacuole	46.61	39.66
CDY68993	Canola	plasma membrane	20.62	39.04
PGSC0003DMT400060120	Potato	extracellular, golgi, vacuole	37.57	39.0
PGSC0003DMT400061634	Potato	plastid	42.66	36.83
PGSC0003DMT400006848	Potato	plastid	38.14	36.49
PGSC0003DMT400006847	Potato	golgi, mitochondrion, peroxisome, plastid	38.7	36.44
PGSC0003DMT400006849	Potato	mitochondrion, plastid	38.42	35.79
Bra034356.1-P	Field mustard	mitochondrion	49.72	27.46
PGSC0003DMT400004379	Potato	cytosol	27.4	18.34
PGSC0003DMT400070409	Potato	cytosol, peroxisome, plastid	23.45	15.29
CDX77120	Canola	extracellular	13.84	13.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400018400	EnsemblPlantsGene:PGSC0003DMG400007142	EntrezGene:102604844	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1
InterPro:IPR029058	PANTHER:PTHR10992	PANTHER:PTHR10992:SF774	PFAM:PF12697	PGSC:PGSC0003DMG400007142	RefSeq:XP_006347243.1
SignalP:SignalP-noTM	SUPFAM:SSF53474	UniParc:UPI000295E682	UniProt:M1AAJ9	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007142]

Coordinates

chr6:-:54914338..54916831

Molecular Weight (calculated)

40315.7 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.139

Length

354 amino acids

Sequence
(BLAST)

001: MVFKKLVLMM MGCLGCAGQP TEPSTEKTES KSLIDESVVV TSPRVKLGDG RYLAYRERGV PKNISKYRII IVHGFGSSKE MSFMASDELL DELGIYLLIF
101: DRAGYGESDI NSKRSLKSEA SDIEELADLL ELGSRFYVIG VSLGCYPAWS CIKHIPGRLA GVALVVPFVN YKWRTLPKDL VKNDYRKQLS RWVIWITCYA
201: RGILHWWLTQ KVFPSASVLD GNPQFFCERD LEVLKNTPGY QLFTQDGLKD RSVFDSLCSD INVAFGKWDF NPLELTDPYP QNESSVHIWQ GVKDKVVPVQ
301: LQRHVSQRLP WIRYHEVPDC GHLLVYDTAV CEAVLTSLLL WEDPPLYKPK LADH

Best Arabidopsis Sequence Match ( AT3G44510.2 )
(BLAST)

001: MEEHLQGRIK LHDGRYLAYK ERGVPKDDAK FTIVLVHGFG SSKDMNFNVS QELVNEIGIY FVLYDRAGYG ESDPNPKRSL KSEAYDVQEL ADGLEIGSRF
101: YLIGISMGSY TVWSCLKHIP QRLAGVAMVA PVVNFRWPSI PKSLMPKDYR REVAKWSVWI ANYFPGLLQW LVTQNMFSTT SMLEKNPVYF NDQDIEVLKH
201: IKGFPMLTKE KLRERGVFGT LRSDFLVAFG DWDFDPADLP DPSLSGPEKG SSSVHIWQGY EDKVMPFQLQ RCLCRKLPWI RYHEVPKGGH LIVHYDGICD
301: AILKSLLLGE DLPMYKPKAV ITEPA

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.