Factsheet for Os02t0104100-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52550.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G52550.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026357	Potato	nucleus	11.48	15.5
AT4G25690.1	Thale cress	nucleus	10.74	15.18
CDX94428	Canola	nucleus	10.37	14.89
Bra013911.1-P	Field mustard	nucleus	10.37	14.51
CDX89401	Canola	nucleus	10.37	14.51
CDY01170	Canola	nucleus	9.63	14.44
AT4G25670.1	Thale cress	nucleus	10.0	14.36
Solyc06g036250.1.1	Tomato	nucleus	11.11	14.35
PGSC0003DMT400074347	Potato	nucleus	11.11	14.35
Bra013909.1-P	Field mustard	nucleus	10.0	14.21
Bra019146.1-P	Field mustard	nucleus	9.26	13.81
CDX89403	Canola	nucleus	9.63	13.68
Solyc03g008000.1.1	Tomato	nucleus	10.74	13.62
CDX94425	Canola	nucleus	9.63	13.54
KRH38385	Soybean	nucleus	9.63	13.07
Os06t0106900-01	Rice	nucleus	10.37	13.02
KRH08864	Soybean	extracellular, mitochondrion, plastid	11.48	12.11
CDY61350	Canola	nucleus	9.26	11.85
Os02t0104200-01	Rice	nucleus	9.63	11.66
VIT_16s0050g01060.t01	Wine grape	golgi	11.48	11.48
KRH35243	Soybean	nucleus	10.0	11.11
CDX91661	Canola	nucleus	10.0	10.89
KRG91581	Soybean	nucleus	9.63	10.79
Bra022600.1-P	Field mustard	nucleus	9.63	10.48
CDY27057	Canola	nucleus	8.89	9.68
AT5G52550.1	Thale cress	nucleus	11.11	8.33

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0P0VDS5	ProteinID:BAS76546.1	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os02g0104100
EnsemblPlants:Os02t0104100-00	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000393920B	SEG:seg	:	:

Description

Similar to MADS-box transcription factor TaAGL18. (Os02t0104100-00)

Coordinates

chr2:+:199223..204482

Molecular Weight (calculated)

30604.9 Da

IEP (calculated)

8.406

GRAVY (calculated)

-0.418

Length

270 amino acids

Sequence
(BLAST)

001: MAAAAAGMGG GGGVQHQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA
101: SSDLQRTIDR YLNHTKNSSA HEEGEESCVQ KWRSEATTLG KKIEAIEGYK SKLLGEGLGS CSVQELQELE VQLEKSLCSI RQKKQKMLMD QILELREKEM
201: NLLKENMVLR DQVCVYIYMA TCFDVIEKLQ IECEDIYVHT DGVTHAMNYI CNYICSVRLC HRHGRRLWES

Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)

001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK

Arabidopsis Description

SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.