Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25690.1 | Thale cress | nucleus | 88.3 | 86.91 |
| Bra013909.1-P | Field mustard | nucleus | 82.98 | 82.11 |
| CDX89403 | Canola | nucleus | 82.98 | 82.11 |
| CDX94428 | Canola | nucleus | 81.91 | 81.91 |
| CDY01170 | Canola | nucleus | 76.6 | 80.0 |
| Bra019146.1-P | Field mustard | nucleus | 75.53 | 78.45 |
| CDX89401 | Canola | nucleus | 80.32 | 78.24 |
| CDX94425 | Canola | nucleus | 79.79 | 78.12 |
| Bra013911.1-P | Field mustard | nucleus | 79.79 | 77.72 |
| CDY61350 | Canola | nucleus | 77.13 | 68.72 |
| PGSC0003DMT400026357 | Potato | nucleus | 53.72 | 50.5 |
| Solyc06g036250.1.1 | Tomato | nucleus | 55.32 | 49.76 |
| PGSC0003DMT400074347 | Potato | nucleus | 54.79 | 49.28 |
| KRH38385 | Soybean | nucleus | 51.6 | 48.74 |
| Solyc03g008000.1.1 | Tomato | nucleus | 54.79 | 48.36 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 57.98 | 40.37 |
| KRH35243 | Soybean | nucleus | 51.06 | 39.51 |
| KRG91581 | Soybean | nucleus | 50.53 | 39.42 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 44.15 | 39.15 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 53.19 | 39.06 |
| Os02t0104200-01 | Rice | nucleus | 45.21 | 38.12 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 44.15 | 37.39 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 44.15 | 37.39 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 44.15 | 37.39 |
| Zm00001d014937_P001 | Maize | nucleus | 45.74 | 37.23 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 43.62 | 36.61 |
| Os06t0106900-01 | Rice | nucleus | 39.89 | 34.88 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.34 | 32.36 |
| TraesCSU01G065700.1 | Wheat | nucleus | 39.89 | 32.05 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 30.85 | 32.04 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 39.36 | 31.76 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 39.36 | 31.49 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 37.23 | 29.91 |
| AT5G52550.1 | Thale cress | nucleus | 54.26 | 28.33 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 25.0 | 25.97 |
| OQU84149 | Sorghum | nucleus | 44.68 | 17.65 |
| Os02t0104100-00 | Rice | nucleus | 14.36 | 10.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828672 | ProteinID:AEE85091.1 | ProteinID:AEE85092.1 | ArrayExpress:AT4G25670 | EnsemblPlantsGene:AT4G25670 |
| RefSeq:AT4G25670 | TAIR:AT4G25670 | RefSeq:AT4G25670-TAIR-G | EnsemblPlants:AT4G25670.1 | TAIR:AT4G25670.1 | EMBL:AY039604 |
| EMBL:AY078015 | Unigene:At.3352 | ncoils:Coil | RefSeq:NP_001190839.1 | RefSeq:NP_567726.1 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR34212 | UniProt:Q94BX3 | UniParc:UPI000009F1D4 |
| SEG:seg | : | : | : | : | : |
Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
Coordinates
chr4:-:13085218..13087090
Molecular Weight (calculated)
20941.7 Da
IEP (calculated)
9.115
GRAVY (calculated)
-0.663
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.