CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013911.1-P	Field mustard	nucleus	99.48	99.48
CDX94425	Canola	nucleus	93.78	94.27
CDX94428	Canola	nucleus	80.83	82.98
CDX89403	Canola	nucleus	80.83	82.11
CDY61350	Canola	nucleus	88.08	80.57
AT4G25670.1	Thale cress	nucleus	78.24	80.32
AT4G25690.1	Thale cress	nucleus	77.2	78.01
CDY01170	Canola	nucleus	69.43	74.44
PGSC0003DMT400026357	Potato	nucleus	49.74	48.0
Solyc06g036250.1.1	Tomato	nucleus	51.3	47.37
PGSC0003DMT400074347	Potato	nucleus	50.78	46.89
Solyc03g008000.1.1	Tomato	nucleus	50.78	46.01
KRH38385	Soybean	nucleus	46.63	45.23
CDY27057	Canola	nucleus	54.92	42.74
CDX91661	Canola	nucleus	54.4	42.34
GSMUA_Achr2P04280_001	Banana	nucleus	44.56	40.57
KRG91581	Soybean	nucleus	48.19	38.59
Os02t0104200-01	Rice	nucleus	44.56	38.56
Zm00001d014937_P001	Maize	nucleus	46.11	38.53
KRH35243	Soybean	nucleus	48.19	38.27
VIT_16s0050g01060.t01	Wine grape	golgi	52.33	37.41
TraesCS6D01G014400.1	Wheat	nucleus	43.01	37.39
HORVU6Hr1G002230.1	Barley	nucleus	43.01	37.39
TraesCS6A01G011600.1	Wheat	nucleus	43.01	37.39
TraesCS6B01G017800.1	Wheat	nucleus	43.01	37.05
KRH08864	Soybean	extracellular, mitochondrion, plastid	47.67	35.94
Os06t0106900-01	Rice	nucleus	39.9	35.81
GSMUA_Achr1P06450_001	Banana	cytosol, golgi, nucleus	46.63	32.73
TraesCSU01G065700.1	Wheat	nucleus	37.82	31.2
HORVU7Hr1G002090.1	Barley	nucleus	37.82	31.06
TraesCS7D01G016200.1	Wheat	nucleus	37.31	30.9
TraesCS6D01G014300.1	Wheat	nucleus	28.5	30.39
TraesCS7A01G019200.1	Wheat	nucleus	35.23	29.06
TraesCS6A01G011500.1	Wheat	nucleus	24.87	26.52
OQU84149	Sorghum	nucleus	44.56	18.07
Os02t0104100-00	Rice	nucleus	14.51	10.37

Protein Annotations

EnsemblPlants:CDX89401	EnsemblPlantsGene:GSBRNA2T00149639001	ncoils:Coil	PANTHER:PTHR34212	PANTHER:PTHR34212:SF1	ProteinID:CDX89401
ProteinID:CDX89401.1	SEG:seg	UniParc:UPI0004EECC7E	MapMan:35.2	:	:

Description

BnaA01g14920D

Coordinates

chrLK031858:+:1432787..1433500

Molecular Weight (calculated)

21533.5 Da

IEP (calculated)

9.201

GRAVY (calculated)

-0.756

Length

193 amino acids

Sequence
(BLAST)

001: MDHVVCKQVQ PLARKGKKKH NGKDEFDRVK QAEKKKRRLE KALATSAAIR AELEKKKQRK LEEQQRLDEE GAAIAEAAAL HVLLGEDSDD GFMLGEGKCC
101: KIDLFRGERT NYVPRQSCAS YAVQGGIGFQ TNGYGRGDSN WSVPYNPSMR GAWDNNNNMG ISADLIAAQV VSSLHISENN DRNAFVFNRM FQG

Best Arabidopsis Sequence Match ( AT4G25670.1 )
(BLAST)

001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG

Arabidopsis Description

AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.