Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | PGSC0003DMT400002331 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | PGSC0003DMT400067082 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g036250.1.1 | Tomato | nucleus | 97.61 | 97.61 |
| PGSC0003DMT400026357 | Potato | nucleus | 69.38 | 72.5 |
| KRH38385 | Soybean | nucleus | 52.63 | 55.28 |
| AT4G25670.1 | Thale cress | nucleus | 49.28 | 54.79 |
| AT4G25690.1 | Thale cress | nucleus | 49.76 | 54.45 |
| Bra019146.1-P | Field mustard | nucleus | 46.41 | 53.59 |
| CDX94425 | Canola | nucleus | 48.8 | 53.12 |
| CDY01170 | Canola | nucleus | 45.45 | 52.78 |
| CDX94428 | Canola | nucleus | 47.37 | 52.66 |
| CDX89403 | Canola | nucleus | 47.37 | 52.11 |
| Bra013909.1-P | Field mustard | nucleus | 47.37 | 52.11 |
| CDX89401 | Canola | nucleus | 46.89 | 50.78 |
| Bra013911.1-P | Field mustard | nucleus | 46.41 | 50.26 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 63.16 | 48.89 |
| CDY61350 | Canola | nucleus | 46.89 | 46.45 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 54.55 | 44.53 |
| Os02t0104200-01 | Rice | nucleus | 46.89 | 43.95 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 44.02 | 43.4 |
| KRH35243 | Soybean | nucleus | 49.76 | 42.8 |
| KRG91581 | Soybean | nucleus | 49.28 | 42.74 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 44.5 | 41.89 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 44.02 | 41.44 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 44.02 | 41.44 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 43.06 | 40.18 |
| Zm00001d014937_P001 | Maize | nucleus | 44.02 | 39.83 |
| CDY27057 | Canola | nucleus | 43.06 | 36.29 |
| CDX91661 | Canola | nucleus | 43.06 | 36.29 |
| Bra022600.1-P | Field mustard | nucleus | 43.06 | 36.29 |
| Os06t0106900-01 | Rice | nucleus | 37.32 | 36.28 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 45.45 | 34.55 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 29.19 | 33.7 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 34.93 | 31.2 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 34.45 | 30.9 |
| TraesCSU01G065700.1 | Wheat | nucleus | 34.45 | 30.77 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 34.45 | 30.64 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 25.84 | 29.83 |
| AT5G52550.1 | Thale cress | nucleus | 43.06 | 25.0 |
| OQU84149 | Sorghum | nucleus | 44.02 | 19.33 |
| Os02t0104100-00 | Rice | nucleus | 14.35 | 11.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074347 | EnsemblPlantsGene:PGSC0003DMG400028898 | EntrezGene:102582801 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF1 |
| PGSC:PGSC0003DMG400028898 | RefSeq:XP_006360199.1 | SEG:seg | UniParc:UPI000295D271 | UniProt:M1CTJ5 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028898]
Coordinates
chr6:-:37860651..37863951
Molecular Weight (calculated)
23629.0 Da
IEP (calculated)
5.452
GRAVY (calculated)
-0.671
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MECAKASPAV RKGKKKQVKD EMDRIKQAEK KKRRLEKALA TSAAIRSELE KKKQKKKEEQ QKLDEEGAAI AEAVALHVLV GEESDDSCEL LLKKDKEVNQ
101: WDLARNFDLF MGGERAMLPH QDLSIYSVEG TQWVSGPNGD GCMWNEQENT AWMVSSVPWV GNVHHQWFDE GNWEVQRISA ELLAAQAVSS LQIAGDAPVD
201: SYVFDRMLR
101: WDLARNFDLF MGGERAMLPH QDLSIYSVEG TQWVSGPNGD GCMWNEQENT AWMVSSVPWV GNVHHQWFDE GNWEVQRISA ELLAAQAVSS LQIAGDAPVD
201: SYVFDRMLR
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.