Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G011500.1 | Wheat | nucleus | 86.19 | 86.19 |
| Bra022600.1-P | Field mustard | nucleus | 50.28 | 36.69 |
| CDY27057 | Canola | nucleus | 49.17 | 35.89 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 43.65 | 35.59 |
| CDX91661 | Canola | nucleus | 48.07 | 35.08 |
| Zm00001d014937_P001 | Maize | nucleus | 40.88 | 32.03 |
| AT4G25670.1 | Thale cress | nucleus | 32.04 | 30.85 |
| CDY01170 | Canola | nucleus | 30.39 | 30.56 |
| CDX94428 | Canola | nucleus | 31.49 | 30.32 |
| Bra013909.1-P | Field mustard | nucleus | 31.49 | 30.0 |
| CDX89403 | Canola | nucleus | 31.49 | 30.0 |
| AT4G25690.1 | Thale cress | nucleus | 31.49 | 29.84 |
| Bra019146.1-P | Field mustard | nucleus | 29.83 | 29.83 |
| KRH38385 | Soybean | nucleus | 32.6 | 29.65 |
| Solyc06g036250.1.1 | Tomato | nucleus | 33.7 | 29.19 |
| PGSC0003DMT400074347 | Potato | nucleus | 33.7 | 29.19 |
| CDX94425 | Canola | nucleus | 30.94 | 29.17 |
| Bra013911.1-P | Field mustard | nucleus | 30.94 | 29.02 |
| PGSC0003DMT400026357 | Potato | nucleus | 32.04 | 29.0 |
| CDX89401 | Canola | nucleus | 30.39 | 28.5 |
| KRG91581 | Soybean | nucleus | 36.46 | 27.39 |
| Solyc03g008000.1.1 | Tomato | nucleus | 32.04 | 27.23 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 34.81 | 27.04 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 39.78 | 26.67 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 30.94 | 26.42 |
| KRH35243 | Soybean | nucleus | 35.36 | 26.34 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 37.02 | 26.17 |
| CDY61350 | Canola | nucleus | 30.39 | 26.07 |
| AT5G52550.1 | Thale cress | nucleus | 43.09 | 21.67 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 32.04 | 21.09 |
| OQU84149 | Sorghum | nucleus | 43.65 | 16.6 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G014300.1 | EnsemblPlantsGene:TraesCS6D01G014300 | ncoils:Coil | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6D:-:5980840..5981880
Molecular Weight (calculated)
20651.6 Da
IEP (calculated)
10.181
GRAVY (calculated)
-1.278
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLRDKTKTG EGKDFPVPVN QAGKVLKKGR KKQEVDRQKQ AEKKRRRLEK ALANSAAIIS ELGKRKQNNK KEEQERPDEV EAAPKKKDEP DRQKQAGKKR
101: TRLEKLLANS AAIISELEKK KQKRKEEQEM LDEEVASIAD AVALHVRIGE DSDESRHLVL NGHGRCNDWD PDAGFNLYME M
101: TRLEKLLANS AAIISELEKK KQKRKEEQEM LDEEVASIAD AVALHVRIGE DSDESRHLVL NGHGRCNDWD PDAGFNLYME M
001: MDSSSSMCKQ AQPIVRKARK KKVKGVVDPI KQAEKKNRRL EKAIATSAAI RAELEKKKQM KKEGQLEAAD EEDSADAAKK KQERDELERI KQAENKKNRL
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
Arabidopsis Description
AT5g52550/F6N7_3 [Source:UniProtKB/TrEMBL;Acc:Q940C2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.