Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G011600.1 | Wheat | nucleus | 97.75 | 97.75 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 96.4 | 96.4 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 94.59 | 93.75 |
| Os02t0104200-01 | Rice | nucleus | 77.48 | 77.13 |
| Zm00001d014937_P001 | Maize | nucleus | 73.87 | 71.0 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 47.3 | 49.53 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 51.35 | 48.93 |
| Bra019146.1-P | Field mustard | nucleus | 38.74 | 47.51 |
| CDY01170 | Canola | nucleus | 38.29 | 47.22 |
| CDX89403 | Canola | nucleus | 38.74 | 45.26 |
| Bra013909.1-P | Field mustard | nucleus | 38.74 | 45.26 |
| CDX94428 | Canola | nucleus | 38.29 | 45.21 |
| AT4G25690.1 | Thale cress | nucleus | 38.74 | 45.03 |
| PGSC0003DMT400026357 | Potato | nucleus | 40.54 | 45.0 |
| CDX94425 | Canola | nucleus | 38.74 | 44.79 |
| Solyc06g036250.1.1 | Tomato | nucleus | 41.89 | 44.5 |
| PGSC0003DMT400074347 | Potato | nucleus | 41.89 | 44.5 |
| AT4G25670.1 | Thale cress | nucleus | 37.39 | 44.15 |
| KRH38385 | Soybean | nucleus | 39.19 | 43.72 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 35.59 | 43.65 |
| Bra013911.1-P | Field mustard | nucleus | 37.84 | 43.52 |
| Solyc03g008000.1.1 | Tomato | nucleus | 41.44 | 43.19 |
| CDX89401 | Canola | nucleus | 37.39 | 43.01 |
| CDY61350 | Canola | nucleus | 38.29 | 40.28 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 48.2 | 38.91 |
| KRH35243 | Soybean | nucleus | 40.09 | 36.63 |
| KRG91581 | Soybean | nucleus | 39.19 | 36.1 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 43.24 | 35.56 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 40.99 | 35.55 |
| OQU84149 | Sorghum | nucleus | 76.13 | 35.5 |
| CDX91661 | Canola | nucleus | 38.29 | 34.27 |
| Bra022600.1-P | Field mustard | nucleus | 38.29 | 34.27 |
| CDY27057 | Canola | nucleus | 37.84 | 33.87 |
| AT5G52550.1 | Thale cress | nucleus | 34.68 | 21.39 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G014400.1 | EnsemblPlantsGene:TraesCS6D01G014400 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:5986911..5987900
Molecular Weight (calculated)
24389.8 Da
IEP (calculated)
9.154
GRAVY (calculated)
-0.736
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKAAGNQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS ELEKKKQKKK EEQERLDEEG ASIAEAVALH VLVGEDSDES RHLVLNKHRR
101: CNDWDPSAGL DFTLDTQGAA DIYSPGGLMC GNQAYASRGR WIDWGNAHPL PTWGEVRDLK ASYYQGTCHQ STVACPGFMA AQAVSSLQIR EDSSSPGQGV
201: AAATVVNRML GGANRLNLYR EI
101: CNDWDPSAGL DFTLDTQGAA DIYSPGGLMC GNQAYASRGR WIDWGNAHPL PTWGEVRDLK ASYYQGTCHQ STVACPGFMA AQAVSSLQIR EDSSSPGQGV
201: AAATVVNRML GGANRLNLYR EI
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.