Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94425 | Canola | nucleus | 85.78 | 94.27 |
| CDX89401 | Canola | nucleus | 80.57 | 88.08 |
| CDX94428 | Canola | nucleus | 68.72 | 77.13 |
| AT4G25670.1 | Thale cress | nucleus | 68.72 | 77.13 |
| CDX89403 | Canola | nucleus | 69.19 | 76.84 |
| CDY01170 | Canola | nucleus | 63.98 | 75.0 |
| AT4G25690.1 | Thale cress | nucleus | 67.77 | 74.87 |
| PGSC0003DMT400026357 | Potato | nucleus | 45.02 | 47.5 |
| Solyc06g036250.1.1 | Tomato | nucleus | 46.92 | 47.37 |
| PGSC0003DMT400074347 | Potato | nucleus | 46.45 | 46.89 |
| Solyc03g008000.1.1 | Tomato | nucleus | 46.45 | 46.01 |
| KRH38385 | Soybean | nucleus | 42.18 | 44.72 |
| CDY27057 | Canola | nucleus | 50.24 | 42.74 |
| CDX91661 | Canola | nucleus | 48.82 | 41.53 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 40.28 | 40.09 |
| Os02t0104200-01 | Rice | nucleus | 42.18 | 39.91 |
| Zm00001d014937_P001 | Maize | nucleus | 42.65 | 38.96 |
| KRG91581 | Soybean | nucleus | 44.08 | 38.59 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 40.28 | 38.29 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 40.28 | 38.29 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 40.28 | 38.29 |
| KRH35243 | Soybean | nucleus | 44.08 | 38.27 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 48.82 | 38.15 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 39.81 | 37.5 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 43.13 | 35.55 |
| Os06t0106900-01 | Rice | nucleus | 36.02 | 35.35 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 42.18 | 32.36 |
| TraesCSU01G065700.1 | Wheat | nucleus | 35.07 | 31.62 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 35.07 | 31.49 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 34.6 | 31.33 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 26.07 | 30.39 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 32.23 | 29.06 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 22.75 | 26.52 |
| OQU84149 | Sorghum | nucleus | 41.71 | 18.49 |
| Os02t0104100-00 | Rice | nucleus | 11.85 | 9.26 |
Protein Annotations
| EnsemblPlants:CDY61350 | EnsemblPlantsGene:GSBRNA2T00033740001 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF1 | ProteinID:CDY61350 |
| ProteinID:CDY61350.1 | SEG:seg | UniParc:UPI0004EEDAC6 | UniProt:A0A078JAU2 | MapMan:35.2 | : |
Description
BnaC03g74770DBnaC03g74770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAU2]
Coordinates
chrLK033987:+:21273..21908
Molecular Weight (calculated)
23536.0 Da
IEP (calculated)
7.875
GRAVY (calculated)
-0.450
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHCVCKQVQ SVASKLKKKK AHGKDEFDRV KQAEKKKRRL EKALATSAAI RAELEKKNQK KLEEQQRLDE EGAAIAEAAA LHVLLGEDSD DALMLGEVNC
101: NKIDLFRGER TNYVPRQSCA SYAVQGGIGF QTNVYGRGDS NWSVPYNPSM RGAWESNNVG ISADLIAAQA VSSLHISENN DRNAFVFNRM LDDNVVLILV
201: FFCDAYLNLR I
101: NKIDLFRGER TNYVPRQSCA SYAVQGGIGF QTNVYGRGDS NWSVPYNPSM RGAWESNNVG ISADLIAAQA VSSLHISENN DRNAFVFNRM LDDNVVLILV
201: FFCDAYLNLR I
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.