Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 1
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os11t0171500-01 | |
| Os12t0169800-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | Os11t0171500-01 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | Os12t0169800-00 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G011600.1 | Wheat | nucleus | 77.58 | 77.93 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 77.58 | 77.93 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 77.13 | 77.48 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 76.68 | 76.34 |
| Zm00001d014937_P001 | Maize | nucleus | 77.13 | 74.46 |
| Os06t0106900-01 | Rice | nucleus | 56.95 | 59.07 |
| CDY01170 | Canola | nucleus | 39.46 | 48.89 |
| Bra019146.1-P | Field mustard | nucleus | 39.46 | 48.62 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 45.74 | 48.11 |
| PGSC0003DMT400026357 | Potato | nucleus | 43.05 | 48.0 |
| Solyc06g036250.1.1 | Tomato | nucleus | 43.95 | 46.89 |
| PGSC0003DMT400074347 | Potato | nucleus | 43.95 | 46.89 |
| CDX94428 | Canola | nucleus | 39.46 | 46.81 |
| AT4G25690.1 | Thale cress | nucleus | 39.91 | 46.6 |
| CDX94425 | Canola | nucleus | 39.91 | 46.35 |
| CDX89403 | Canola | nucleus | 39.46 | 46.32 |
| Bra013909.1-P | Field mustard | nucleus | 39.46 | 46.32 |
| Solyc03g008000.1.1 | Tomato | nucleus | 43.95 | 46.01 |
| AT4G25670.1 | Thale cress | nucleus | 38.12 | 45.21 |
| Bra013911.1-P | Field mustard | nucleus | 39.01 | 45.08 |
| CDX89401 | Canola | nucleus | 38.56 | 44.56 |
| KRH38385 | Soybean | nucleus | 39.46 | 44.22 |
| CDY61350 | Canola | nucleus | 39.91 | 42.18 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.53 | 38.55 |
| OQU84149 | Sorghum | nucleus | 80.72 | 37.82 |
| KRH35243 | Soybean | nucleus | 39.46 | 36.21 |
| KRG91581 | Soybean | nucleus | 38.56 | 35.68 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 42.6 | 35.19 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 40.36 | 35.16 |
| Bra022600.1-P | Field mustard | nucleus | 37.67 | 33.87 |
| CDY27057 | Canola | nucleus | 37.22 | 33.47 |
| CDX91661 | Canola | nucleus | 37.22 | 33.47 |
| AT5G52550.1 | Thale cress | nucleus | 32.74 | 20.28 |
| Os02t0104100-00 | Rice | nucleus | 11.66 | 9.63 |
Protein Annotations
| EMBL:AK121824 | EnsemblPlants:Os02t0104200-01 | EnsemblPlantsGene:Os02g0104200 | EntrezGene:4328003 | ncoils:Coil | PANTHER:PTHR34212 |
| PANTHER:PTHR34212:SF2 | ProteinID:BAD06274.1 | ProteinID:BAD07534.1 | ProteinID:BAF07525.1 | ProteinID:BAS76547.1 | ProteinID:EEE56136.1 |
| RefSeq:XP_015625204.1 | SEG:seg | UniParc:UPI000022F332 | UniProt:Q6YPG9 | MapMan:35.2 | : |
Description
MADS BOX GENE 60Conserved hypothetical protein. (Os02t0104200-01);Conserved hypothetical protein. (Os02t0104200-02)
Coordinates
chr2:+:205432..207453
Molecular Weight (calculated)
24569.2 Da
IEP (calculated)
8.138
GRAVY (calculated)
-0.608
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKAAANQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS ELEKKKQKKR EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHRR
101: CNHWDHSAGF DFAVDAQGAD IYPPDGLIQC ADHVYAPKGR CIDWGIGQPL PSWGEVKDLQ LQAPCYQGMF HQSVACPGFI AAQAVSSLQI GGDSSDITSP
201: SQGATVVNRM LGATNRLNLY REI
101: CNHWDHSAGF DFAVDAQGAD IYPPDGLIQC ADHVYAPKGR CIDWGIGQPL PSWGEVKDLQ LQAPCYQGMF HQSVACPGFI AAQAVSSLQI GGDSSDITSP
201: SQGATVVNRM LGATNRLNLY REI
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.