Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g036250.1.1 | Tomato | nucleus | 48.89 | 63.16 |
| PGSC0003DMT400074347 | Potato | nucleus | 48.89 | 63.16 |
| PGSC0003DMT400026357 | Potato | nucleus | 45.56 | 61.5 |
| KRH38385 | Soybean | nucleus | 44.81 | 60.8 |
| Solyc03g008000.1.1 | Tomato | nucleus | 47.41 | 60.09 |
| KRG91581 | Soybean | nucleus | 53.33 | 59.75 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 55.56 | 58.59 |
| CDY01170 | Canola | nucleus | 38.89 | 58.33 |
| KRH35243 | Soybean | nucleus | 52.22 | 58.02 |
| Bra019146.1-P | Field mustard | nucleus | 38.89 | 58.01 |
| AT4G25670.1 | Thale cress | nucleus | 40.37 | 57.98 |
| AT4G25690.1 | Thale cress | nucleus | 40.0 | 56.54 |
| CDX94428 | Canola | nucleus | 38.89 | 55.85 |
| CDX89403 | Canola | nucleus | 38.89 | 55.26 |
| Bra013909.1-P | Field mustard | nucleus | 38.89 | 55.26 |
| CDX94425 | Canola | nucleus | 38.89 | 54.69 |
| CDX89401 | Canola | nucleus | 37.41 | 52.33 |
| Bra013911.1-P | Field mustard | nucleus | 37.04 | 51.81 |
| CDY61350 | Canola | nucleus | 38.15 | 48.82 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.78 | 46.91 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 35.56 | 45.28 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 35.56 | 43.24 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 35.56 | 43.24 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 35.56 | 42.86 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 35.19 | 42.79 |
| Os02t0104200-01 | Rice | nucleus | 35.19 | 42.6 |
| Bra022600.1-P | Field mustard | nucleus | 38.15 | 41.53 |
| CDX91661 | Canola | nucleus | 37.78 | 41.13 |
| CDY27057 | Canola | nucleus | 37.78 | 41.13 |
| Zm00001d014937_P001 | Maize | nucleus | 35.19 | 41.13 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 26.67 | 39.78 |
| Os06t0106900-01 | Rice | nucleus | 29.63 | 37.21 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 31.11 | 36.05 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 31.11 | 35.74 |
| TraesCSU01G065700.1 | Wheat | nucleus | 30.37 | 35.04 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 22.96 | 34.25 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 29.63 | 34.19 |
| AT5G52550.1 | Thale cress | nucleus | 37.78 | 28.33 |
| OQU84149 | Sorghum | nucleus | 35.56 | 20.17 |
| Os02t0104100-00 | Rice | nucleus | 11.48 | 11.48 |
Protein Annotations
| EntrezGene:100250830 | wikigene:100250830 | MapMan:35.2 | EMBL:AM425836 | ProteinID:CAN66701 | ProteinID:CAN66701.1 |
| ProteinID:CCB47842 | ProteinID:CCB47842.1 | ncoils:Coil | UniProt:F6H6D1 | EMBL:FN595243 | EntrezGene:LOC100250830 |
| wikigene:LOC100250830 | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF1 | TIGR:TC55468 | UniParc:UPI0002107EA8 | ArrayExpress:VIT_16s0050g01060 |
| EnsemblPlantsGene:VIT_16s0050g01060 | EnsemblPlants:VIT_16s0050g01060.t01 | RefSeq:XP_002273368 | RefSeq:XP_002273368.1 | RefSeq:XP_002273394 | RefSeq:XP_002273394.1 |
| RefSeq:XP_002273424 | RefSeq:XP_002273424.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr16:-:17985618..17989715
Molecular Weight (calculated)
29992.0 Da
IEP (calculated)
7.920
GRAVY (calculated)
-0.430
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKCKGCGKL GRMVSKDGFV SAYHSALLLC PIVSVWDCAV RKMRYSFRPE WLEKLVVVMD NTACTKVPSA VRKVKKKQVK DELDRQKQAE KKKRRLEKAL
101: ATSAAIISEL EKKKQKKKEE QQRLDEEGAA IAEAVALHVL LGEDSDDSRK MALKKDEGFN PWDCATSIDL LMGGRSGIPC QGPTKCSLNE IEWVSNVYES
201: GCEWNYLGNG DWSVSSGPFR RDLHPPYFEE GSWETTEISA GLLAAQAVSS LQIAEDAPVD TIVFNGMLRG
101: ATSAAIISEL EKKKQKKKEE QQRLDEEGAA IAEAVALHVL LGEDSDDSRK MALKKDEGFN PWDCATSIDL LMGGRSGIPC QGPTKCSLNE IEWVSNVYES
201: GCEWNYLGNG DWSVSSGPFR RDLHPPYFEE GSWETTEISA GLLAAQAVSS LQIAEDAPVD TIVFNGMLRG
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.