Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | EES09373 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | EES16732 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014937_P001 | Maize | nucleus | 42.02 | 86.58 |
| Os02t0104200-01 | Rice | nucleus | 37.82 | 80.72 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 36.13 | 77.48 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 35.71 | 76.58 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 35.5 | 76.13 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 35.08 | 74.55 |
| Os06t0106900-01 | Rice | nucleus | 26.47 | 58.6 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 22.48 | 50.47 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 24.58 | 49.79 |
| TraesCSU01G065700.1 | Wheat | nucleus | 24.16 | 49.15 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 23.95 | 48.93 |
| CDY01170 | Canola | nucleus | 18.07 | 47.78 |
| Bra019146.1-P | Field mustard | nucleus | 18.07 | 47.51 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 23.11 | 47.01 |
| CDX94425 | Canola | nucleus | 18.7 | 46.35 |
| Bra013909.1-P | Field mustard | nucleus | 18.49 | 46.32 |
| CDX89403 | Canola | nucleus | 18.49 | 46.32 |
| CDX94428 | Canola | nucleus | 18.28 | 46.28 |
| PGSC0003DMT400026357 | Potato | nucleus | 19.12 | 45.5 |
| Bra013911.1-P | Field mustard | nucleus | 18.28 | 45.08 |
| AT4G25670.1 | Thale cress | nucleus | 17.65 | 44.68 |
| CDX89401 | Canola | nucleus | 18.07 | 44.56 |
| AT4G25690.1 | Thale cress | nucleus | 17.86 | 44.5 |
| Solyc06g036250.1.1 | Tomato | nucleus | 19.54 | 44.5 |
| KRH38385 | Soybean | nucleus | 18.49 | 44.22 |
| Solyc03g008000.1.1 | Tomato | nucleus | 19.75 | 44.13 |
| PGSC0003DMT400074347 | Potato | nucleus | 19.33 | 44.02 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 16.6 | 43.65 |
| CDY61350 | Canola | nucleus | 18.49 | 41.71 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 23.11 | 40.0 |
| KRH35243 | Soybean | nucleus | 19.75 | 38.68 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 14.71 | 38.67 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 19.96 | 37.11 |
| KRG91581 | Soybean | nucleus | 18.49 | 36.51 |
| CDY27057 | Canola | nucleus | 18.7 | 35.89 |
| CDX91661 | Canola | nucleus | 18.7 | 35.89 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 20.17 | 35.56 |
| Bra022600.1-P | Field mustard | nucleus | 18.49 | 35.48 |
| AT5G52550.1 | Thale cress | nucleus | 19.54 | 25.83 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:8085163 | UniProt:A0A1Z5RKP1 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlants:OQU84149 |
| ProteinID:OQU84149 | ProteinID:OQU84149.1 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3004G003401 |
| SUPFAM:SSF55455 | unigene:Sbi.19800 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B8BABA8 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:281174..292704
Molecular Weight (calculated)
52797.8 Da
IEP (calculated)
6.853
GRAVY (calculated)
-0.617
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMATAAAAM DVDAPAPAPV PDGNAAANKQ GRRGRREMRR IEDSTSRQVT FSKRRSGLLK KAYELSVLCD AEVALIVFSP RGRLYQFASA ADLQNTIDRY
101: LKHTEGTLAN GKVETGIEKW KYEATTLGKK IDAIETYKRK LLGENLGSCS VQELKELEAQ LEKSLSIIRQ RKERKLMDQI LELREKEQKL LMENAMLRDQ
201: CKALPLLELN DNKEHDHHMD GAGDGGEDDE AAAAKEDVET ELAIGTVVMD KAIMSNNQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS
301: ELEKKKQKKK EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHIR CNHWDASAAF EFTVDAQSTD IYPSDDGLIC ASHAYAPRPK GRWADWGIGQ
401: PLPSWGEVSD LQGPYYQGTF HQSVTCPGFI AAQAVSSLQI REESSEITSP SQGAAAATVV NRMLGGTNRL NLYREI
101: LKHTEGTLAN GKVETGIEKW KYEATTLGKK IDAIETYKRK LLGENLGSCS VQELKELEAQ LEKSLSIIRQ RKERKLMDQI LELREKEQKL LMENAMLRDQ
201: CKALPLLELN DNKEHDHHMD GAGDGGEDDE AAAAKEDVET ELAIGTVVMD KAIMSNNQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS
301: ELEKKKQKKK EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHIR CNHWDASAAF EFTVDAQSTD IYPSDDGLIC ASHAYAPRPK GRWADWGIGQ
401: PLPSWGEVSD LQGPYYQGTF HQSVTCPGFI AAQAVSSLQI REESSEITSP SQGAAAATVV NRMLGGTNRL NLYREI
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.