Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G014400.1 | Wheat | nucleus | 96.4 | 96.4 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 96.4 | 96.4 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 93.69 | 92.86 |
| Os02t0104200-01 | Rice | nucleus | 77.93 | 77.58 |
| Zm00001d014937_P001 | Maize | nucleus | 73.42 | 70.56 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 47.3 | 49.53 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 50.9 | 48.09 |
| Bra019146.1-P | Field mustard | nucleus | 38.74 | 47.51 |
| CDY01170 | Canola | nucleus | 38.29 | 47.22 |
| PGSC0003DMT400026357 | Potato | nucleus | 40.99 | 45.5 |
| AT4G25690.1 | Thale cress | nucleus | 38.74 | 45.03 |
| CDX94425 | Canola | nucleus | 38.74 | 44.79 |
| CDX89403 | Canola | nucleus | 38.29 | 44.74 |
| Bra013909.1-P | Field mustard | nucleus | 38.29 | 44.74 |
| CDX94428 | Canola | nucleus | 37.84 | 44.68 |
| AT4G25670.1 | Thale cress | nucleus | 37.39 | 44.15 |
| Solyc03g008000.1.1 | Tomato | nucleus | 42.34 | 44.13 |
| Solyc06g036250.1.1 | Tomato | nucleus | 41.44 | 44.02 |
| PGSC0003DMT400074347 | Potato | nucleus | 41.44 | 44.02 |
| Bra013911.1-P | Field mustard | nucleus | 37.84 | 43.52 |
| KRH38385 | Soybean | nucleus | 38.74 | 43.22 |
| CDX89401 | Canola | nucleus | 37.39 | 43.01 |
| CDY61350 | Canola | nucleus | 38.29 | 40.28 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.75 | 38.55 |
| OQU84149 | Sorghum | nucleus | 77.48 | 36.13 |
| KRH35243 | Soybean | nucleus | 39.19 | 35.8 |
| KRG91581 | Soybean | nucleus | 38.29 | 35.27 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 42.79 | 35.19 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 40.54 | 35.16 |
| CDX91661 | Canola | nucleus | 38.74 | 34.68 |
| CDY27057 | Canola | nucleus | 37.84 | 33.87 |
| Bra022600.1-P | Field mustard | nucleus | 37.39 | 33.47 |
| AT5G52550.1 | Thale cress | nucleus | 35.14 | 21.67 |
Protein Annotations
| EMBL:AK359659 | EnsemblPlants:HORVU6Hr1G002230.1 | EnsemblPlantsGene:HORVU6Hr1G002230 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 |
| SEG:seg | UniParc:UPI00020057A0 | UniProt:F2D6Z7 | MapMan:35.2 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D6Z7]
Coordinates
chrchr6H:+:6137844..6140617
Molecular Weight (calculated)
24548.1 Da
IEP (calculated)
9.369
GRAVY (calculated)
-0.739
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPAGNQAA KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS ELEKKKQKKK EEQERLDEEG ASIAEAVALH VLIGEDSDES RHLVLNKHRR
101: CNDWDPSAGL DFTLDMQGAG DIYSPGGLMC ANQAYASRGR WIDWGNAHPL PTWGEVRDLK ASYYQGTFHQ STVACPGFMA AQAVSSLQIR EDSSSPGQGV
201: AAATVVNRML GGTNRLNLYR EI
101: CNDWDPSAGL DFTLDMQGAG DIYSPGGLMC ANQAYASRGR WIDWGNAHPL PTWGEVRDLK ASYYQGTFHQ STVACPGFMA AQAVSSLQIR EDSSSPGQGV
201: AAATVVNRML GGTNRLNLYR EI
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.