Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P04280_001 | Banana | nucleus | 51.27 | 66.51 |
| KRH35243 | Soybean | nucleus | 44.73 | 50.62 |
| KRG91581 | Soybean | nucleus | 43.64 | 49.79 |
| CDY01170 | Canola | nucleus | 32.36 | 49.44 |
| Bra019146.1-P | Field mustard | nucleus | 32.36 | 49.17 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 38.91 | 48.2 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 46.91 | 47.78 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 38.55 | 47.75 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 38.55 | 47.75 |
| AT4G25690.1 | Thale cress | nucleus | 33.09 | 47.64 |
| Os02t0104200-01 | Rice | nucleus | 38.55 | 47.53 |
| PGSC0003DMT400026357 | Potato | nucleus | 34.55 | 47.5 |
| CDX94425 | Canola | nucleus | 33.09 | 47.4 |
| AT4G25670.1 | Thale cress | nucleus | 32.36 | 47.34 |
| KRH38385 | Soybean | nucleus | 34.18 | 47.24 |
| CDX89401 | Canola | nucleus | 32.73 | 46.63 |
| Zm00001d014937_P001 | Maize | nucleus | 38.91 | 46.32 |
| Bra013911.1-P | Field mustard | nucleus | 32.36 | 46.11 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 42.91 | 46.09 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 37.45 | 45.98 |
| CDX94428 | Canola | nucleus | 31.27 | 45.74 |
| Solyc03g008000.1.1 | Tomato | nucleus | 35.27 | 45.54 |
| PGSC0003DMT400074347 | Potato | nucleus | 34.55 | 45.45 |
| Bra013909.1-P | Field mustard | nucleus | 31.27 | 45.26 |
| CDX89403 | Canola | nucleus | 31.27 | 45.26 |
| Solyc06g036250.1.1 | Tomato | nucleus | 34.18 | 44.98 |
| Os06t0106900-01 | Rice | nucleus | 33.09 | 42.33 |
| CDY61350 | Canola | nucleus | 32.36 | 42.18 |
| TraesCSU01G065700.1 | Wheat | nucleus | 33.45 | 39.32 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 33.09 | 39.06 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 32.73 | 38.3 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 32.0 | 37.61 |
| Bra022600.1-P | Field mustard | nucleus | 30.55 | 33.87 |
| CDX91661 | Canola | nucleus | 30.18 | 33.47 |
| CDY27057 | Canola | nucleus | 29.82 | 33.06 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 21.09 | 32.04 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 18.91 | 28.73 |
| OQU84149 | Sorghum | nucleus | 40.0 | 23.11 |
| AT5G52550.1 | Thale cress | nucleus | 30.18 | 23.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P06450_001 | EnsemblPlants:GSMUA_Achr1T06450_001 | EnsemblPlantsGene:GSMUA_Achr1G06450_001 | ncoils:Coil | PANTHER:PTHR34212 | SEG:seg |
| UniParc:UPI000296410C | UniProt:M0RXK3 | MapMan:35.2 | : | : | : |
Description
Putative uncharacterized protein AT4g25670 [Source:GMGC_GENE;Acc:GSMUA_Achr1G06450_001]
Coordinates
chr1:+:5151142..5152356
Molecular Weight (calculated)
30415.2 Da
IEP (calculated)
9.336
GRAVY (calculated)
-0.473
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEHLCCDNL GKRAIRNALA STYHFSLLLS PVVSFWDCIF RKIRYSFRPE WKVKCGQVSP VLKKGKKKQA KGELDRLKQA EKKKRRLEKA LATSAAIRSE
101: LEKKKQKKIE EQQRLDAEGA AIAESVALHV LVGEDTDESC HFMVKDASEH SPWEYSHSID HLMGYQGLAK YSSGNGLGWA TEAHVPAWKC NNWGIGLPLP
201: SQFHLKDFRS SAYDEAGRGA DISAGLEAAQ AVASLQIAED SHGARFDGQG AATVVINKLL GGSNTGDKFN IYRKI
101: LEKKKQKKIE EQQRLDAEGA AIAESVALHV LVGEDTDESC HFMVKDASEH SPWEYSHSID HLMGYQGLAK YSSGNGLGWA TEAHVPAWKC NNWGIGLPLP
201: SQFHLKDFRS SAYDEAGRGA DISAGLEAAQ AVASLQIAED SHGARFDGQG AATVVINKLL GGSNTGDKFN IYRKI
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.