Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G014400.1 | Wheat | nucleus | 97.75 | 97.75 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 96.4 | 96.4 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 94.14 | 93.3 |
| Os02t0104200-01 | Rice | nucleus | 77.93 | 77.58 |
| Zm00001d014937_P001 | Maize | nucleus | 74.32 | 71.43 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 47.3 | 49.53 |
| Bra019146.1-P | Field mustard | nucleus | 38.74 | 47.51 |
| CDY01170 | Canola | nucleus | 38.29 | 47.22 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 49.55 | 47.01 |
| CDX89403 | Canola | nucleus | 38.74 | 45.26 |
| Bra013909.1-P | Field mustard | nucleus | 38.74 | 45.26 |
| CDX94428 | Canola | nucleus | 38.29 | 45.21 |
| AT4G25690.1 | Thale cress | nucleus | 38.74 | 45.03 |
| PGSC0003DMT400026357 | Potato | nucleus | 40.54 | 45.0 |
| CDX94425 | Canola | nucleus | 38.74 | 44.79 |
| AT4G25670.1 | Thale cress | nucleus | 37.39 | 44.15 |
| PGSC0003DMT400074347 | Potato | nucleus | 41.44 | 44.02 |
| Solyc06g036250.1.1 | Tomato | nucleus | 41.44 | 44.02 |
| KRH38385 | Soybean | nucleus | 39.19 | 43.72 |
| Bra013911.1-P | Field mustard | nucleus | 37.84 | 43.52 |
| Solyc03g008000.1.1 | Tomato | nucleus | 41.44 | 43.19 |
| CDX89401 | Canola | nucleus | 37.39 | 43.01 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 33.33 | 40.88 |
| CDY61350 | Canola | nucleus | 38.29 | 40.28 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.75 | 38.55 |
| KRH35243 | Soybean | nucleus | 40.09 | 36.63 |
| KRG91581 | Soybean | nucleus | 39.19 | 36.1 |
| OQU84149 | Sorghum | nucleus | 76.58 | 35.71 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 43.24 | 35.56 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 40.99 | 35.55 |
| CDX91661 | Canola | nucleus | 38.74 | 34.68 |
| Bra022600.1-P | Field mustard | nucleus | 38.29 | 34.27 |
| CDY27057 | Canola | nucleus | 37.84 | 33.87 |
| AT5G52550.1 | Thale cress | nucleus | 34.68 | 21.39 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G011600.1 | EnsemblPlantsGene:TraesCS6A01G011600 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:5326082..5327072
Molecular Weight (calculated)
24390.8 Da
IEP (calculated)
9.076
GRAVY (calculated)
-0.742
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKAAGNQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS ELEKKKQKKK EEQERLDEEG ASIAEAVALH VLIGEDSDES RHLVLNKHRR
101: CNDWDPSAGL DFTLDTQGAA DIYSPGGLMC GNQAYASSGR WIDWGNAHPL PTWGEVRDLK ASYYQGTLHQ STVACPGYMA AQAVSSLQIR EDSSSPGQGV
201: AAATVVNRML GGTNRLNLYR EI
101: CNDWDPSAGL DFTLDTQGAA DIYSPGGLMC GNQAYASSGR WIDWGNAHPL PTWGEVRDLK ASYYQGTLHQ STVACPGYMA AQAVSSLQIR EDSSSPGQGV
201: AAATVVNRML GGTNRLNLYR EI
001: MDHTLCKQVV QPVTRKVKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEETG
101: FGMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSVSYKPFMK DVWDNNMVIS ADLIAAQAVS SLQISEDADR NAYVFETMFG G
101: FGMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSVSYKPFMK DVWDNNMVIS ADLIAAQAVS SLQISEDADR NAYVFETMFG G
Arabidopsis Description
AT4G25690 protein [Source:UniProtKB/TrEMBL;Acc:Q9SZZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.