Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89401 | Canola | nucleus | 94.27 | 93.78 |
| CDY61350 | Canola | nucleus | 94.27 | 85.78 |
| CDX94428 | Canola | nucleus | 79.69 | 81.38 |
| CDX89403 | Canola | nucleus | 79.69 | 80.53 |
| AT4G25670.1 | Thale cress | nucleus | 78.12 | 79.79 |
| AT4G25690.1 | Thale cress | nucleus | 77.08 | 77.49 |
| CDY01170 | Canola | nucleus | 69.27 | 73.89 |
| PGSC0003DMT400026357 | Potato | nucleus | 51.56 | 49.5 |
| Solyc06g036250.1.1 | Tomato | nucleus | 53.65 | 49.28 |
| PGSC0003DMT400074347 | Potato | nucleus | 53.12 | 48.8 |
| Solyc03g008000.1.1 | Tomato | nucleus | 52.6 | 47.42 |
| KRH38385 | Soybean | nucleus | 47.4 | 45.73 |
| CDY27057 | Canola | nucleus | 55.73 | 43.15 |
| CDX91661 | Canola | nucleus | 54.17 | 41.94 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 44.79 | 40.57 |
| Os02t0104200-01 | Rice | nucleus | 46.35 | 39.91 |
| KRG91581 | Soybean | nucleus | 49.48 | 39.42 |
| Zm00001d014937_P001 | Maize | nucleus | 47.4 | 39.39 |
| KRH35243 | Soybean | nucleus | 49.48 | 39.09 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 54.69 | 38.89 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 44.79 | 38.74 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 44.79 | 38.74 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 44.79 | 38.74 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 44.27 | 37.95 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 48.44 | 36.33 |
| Os06t0106900-01 | Rice | nucleus | 40.62 | 36.28 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.4 | 33.09 |
| TraesCSU01G065700.1 | Wheat | nucleus | 39.06 | 32.05 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 39.06 | 31.91 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 38.54 | 31.76 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 29.17 | 30.94 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 36.46 | 29.91 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 25.52 | 27.07 |
| OQU84149 | Sorghum | nucleus | 46.35 | 18.7 |
| Os02t0104100-00 | Rice | nucleus | 13.54 | 9.63 |
Protein Annotations
| EnsemblPlants:CDX94425 | EnsemblPlantsGene:GSBRNA2T00157569001 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF1 | ProteinID:CDX94425 |
| ProteinID:CDX94425.1 | SEG:seg | UniParc:UPI0004EC30A2 | MapMan:35.2 | : | : |
Description
BnaC01g17590D
Coordinates
chrLK031881:+:1108710..1109440
Molecular Weight (calculated)
21379.3 Da
IEP (calculated)
9.149
GRAVY (calculated)
-0.690
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHVVCKQVQ PLARKGKKKH NGKDEFDRVK QAEKKKRRLE KALATSAAIR AELEKKKQKK LEEQQRLDEE GAAIAEAAAL HVLLGEDSDD ALMLGEVNCN
101: KIDLFRGERT NYVPRQSCAS YAVQGGIGFQ TNVYGRGDSN WSVPYNPSMR GAWESNNVGI SADLIAAQAV SSLHISENND RNAFVFNRMF QG
101: KIDLFRGERT NYVPRQSCAS YAVQGGIGFQ TNVYGRGDSN WSVPYNPSMR GAWESNNVGI SADLIAAQAV SSLHISENND RNAFVFNRMF QG
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.