CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89403	Canola	nucleus	96.81	95.79
CDY01170	Canola	nucleus	78.72	82.22
AT4G25670.1	Thale cress	nucleus	81.91	81.91
CDX89401	Canola	nucleus	82.98	80.83
CDX94425	Canola	nucleus	81.38	79.69
AT4G25690.1	Thale cress	nucleus	80.32	79.06
CDY61350	Canola	nucleus	77.13	68.72
PGSC0003DMT400026357	Potato	nucleus	51.6	48.5
Solyc06g036250.1.1	Tomato	nucleus	53.19	47.85
PGSC0003DMT400074347	Potato	nucleus	52.66	47.37
KRH38385	Soybean	nucleus	49.47	46.73
Solyc03g008000.1.1	Tomato	nucleus	51.6	45.54
CDX91661	Canola	nucleus	56.38	42.74
CDY27057	Canola	nucleus	55.32	41.94
Os02t0104200-01	Rice	nucleus	46.81	39.46
Zm00001d014937_P001	Maize	nucleus	48.4	39.39
GSMUA_Achr2P04280_001	Banana	nucleus	44.15	39.15
VIT_16s0050g01060.t01	Wine grape	golgi	55.85	38.89
TraesCS6D01G014400.1	Wheat	nucleus	45.21	38.29
TraesCS6A01G011600.1	Wheat	nucleus	45.21	38.29
KRG91581	Soybean	nucleus	48.94	38.17
TraesCS6B01G017800.1	Wheat	nucleus	45.21	37.95
KRH35243	Soybean	nucleus	48.94	37.86
HORVU6Hr1G002230.1	Barley	nucleus	44.68	37.84
KRH08864	Soybean	extracellular, mitochondrion, plastid	51.06	37.5
Os06t0106900-01	Rice	nucleus	41.49	36.28
TraesCSU01G065700.1	Wheat	nucleus	40.96	32.91
HORVU7Hr1G002090.1	Barley	nucleus	40.43	32.34
TraesCS7D01G016200.1	Wheat	nucleus	39.89	32.19
TraesCS6D01G014300.1	Wheat	nucleus	30.32	31.49
GSMUA_Achr1P06450_001	Banana	cytosol, golgi, nucleus	45.74	31.27
TraesCS7A01G019200.1	Wheat	nucleus	38.3	30.77
TraesCS6A01G011500.1	Wheat	nucleus	27.13	28.18
OQU84149	Sorghum	nucleus	46.28	18.28
Os02t0104100-00	Rice	nucleus	14.89	10.37

Protein Annotations

EnsemblPlants:CDX94428	EnsemblPlantsGene:GSBRNA2T00157572001	ncoils:Coil	PANTHER:PTHR34212	ProteinID:CDX94428	ProteinID:CDX94428.1
SEG:seg	UniParc:UPI0004EC787E	MapMan:35.2	:	:	:

Description

BnaC01g17560D

Coordinates

chrLK031881:+:1112629..1113439

Molecular Weight (calculated)

20954.9 Da

IEP (calculated)

9.477

GRAVY (calculated)

-0.670

Length

188 amino acids

Sequence
(BLAST)

001: MDHAVCKQVQ PLARKGKSKK HNGKDEFDRV KQAEKKKRRL EKALANSAAI RAELEKKKQR KLEEQQRLDE EGAAIAEAVA LHVLLGEDSD DSSRVMLGQE
101: KGCFKMDLFR GENYVPRQSC ASYAVQGIGF VSNGYGLGES NWSPFMRESW DSNMGVSADL IAAQAVSSLR ISENTDRNAF VLKGMFRG

Best Arabidopsis Sequence Match ( AT4G25670.1 )
(BLAST)

001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG

Arabidopsis Description

AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.