Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | KRG91803 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | KRH34983 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | KRH34984 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35243 | Soybean | nucleus | 90.46 | 89.71 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 74.69 | 70.31 |
| KRH38385 | Soybean | nucleus | 54.36 | 65.83 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 59.75 | 53.33 |
| CDY01170 | Canola | nucleus | 39.0 | 52.22 |
| Bra019146.1-P | Field mustard | nucleus | 39.0 | 51.93 |
| AT4G25670.1 | Thale cress | nucleus | 39.42 | 50.53 |
| CDX94425 | Canola | nucleus | 39.42 | 49.48 |
| Bra013909.1-P | Field mustard | nucleus | 39.0 | 49.47 |
| CDX89403 | Canola | nucleus | 39.0 | 49.47 |
| PGSC0003DMT400074347 | Potato | nucleus | 42.74 | 49.28 |
| CDX94428 | Canola | nucleus | 38.17 | 48.94 |
| Solyc06g036250.1.1 | Tomato | nucleus | 42.32 | 48.8 |
| AT4G25690.1 | Thale cress | nucleus | 38.59 | 48.69 |
| PGSC0003DMT400026357 | Potato | nucleus | 40.25 | 48.5 |
| CDX89401 | Canola | nucleus | 38.59 | 48.19 |
| Bra013911.1-P | Field mustard | nucleus | 38.17 | 47.67 |
| Solyc03g008000.1.1 | Tomato | nucleus | 41.49 | 46.95 |
| CDY61350 | Canola | nucleus | 38.59 | 44.08 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 49.79 | 43.64 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 36.1 | 39.19 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 36.1 | 39.19 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 34.02 | 38.68 |
| Os02t0104200-01 | Rice | nucleus | 35.68 | 38.56 |
| Bra022600.1-P | Field mustard | nucleus | 39.42 | 38.31 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 35.27 | 38.29 |
| CDX91661 | Canola | nucleus | 39.0 | 37.9 |
| CDY27057 | Canola | nucleus | 39.0 | 37.9 |
| Zm00001d014937_P001 | Maize | nucleus | 36.1 | 37.66 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 34.44 | 37.05 |
| Os06t0106900-01 | Rice | nucleus | 32.78 | 36.74 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 27.39 | 36.46 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 31.54 | 32.34 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 30.71 | 31.76 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 30.71 | 31.62 |
| TraesCSU01G065700.1 | Wheat | nucleus | 30.71 | 31.62 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 23.65 | 31.49 |
| AT5G52550.1 | Thale cress | nucleus | 38.17 | 25.56 |
| OQU84149 | Sorghum | nucleus | 36.51 | 18.49 |
| Os02t0104100-00 | Rice | nucleus | 10.79 | 9.63 |
Protein Annotations
| EMBL:ACUP02012692 | EnsemblPlants:KRG91581 | EnsemblPlantsGene:GLYMA_20G162500 | EntrezGene:100802248 | ncoils:Coil | PANTHER:PTHR34212 |
| PANTHER:PTHR34212:SF1 | ProteinID:KRG91581 | ProteinID:KRG91581.1 | SEG:seg | UniParc:UPI0006EE012C | UniProt:A0A0R0EBZ4 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:40015933..40018763
Molecular Weight (calculated)
27065.5 Da
IEP (calculated)
9.381
GRAVY (calculated)
-0.565
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKCKGCGKL GRMGTTNGSM SAYEFSLMLS PVVSFWDCIF RKMRYSYRPE WVSMDNMACN KGQHVRKAKK KQVKDKLDRL KQAEKKKRRL EKALATSAAI
101: ISELEKKKQK KKEEQQRLNE EGAAIAEAVA LHVLLGEDSD DSCNVVLNDS GCKTWNYNHK LGLFMGERTA CFPHLDGGTW SVSAESGKWS FTSGPLEKNV
201: YEPLYEEARW GPTGFSVDLI AAQAARSLHI AKDADEARII F
101: ISELEKKKQK KKEEQQRLNE EGAAIAEAVA LHVLLGEDSD DSCNVVLNDS GCKTWNYNHK LGLFMGERTA CFPHLDGGTW SVSAESGKWS FTSGPLEKNV
201: YEPLYEEARW GPTGFSVDLI AAQAARSLHI AKDADEARII F
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.