Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019146.1-P | Field mustard | nucleus | 93.33 | 92.82 |
| CDX94428 | Canola | nucleus | 82.22 | 78.72 |
| CDX89403 | Canola | nucleus | 81.67 | 77.37 |
| AT4G25670.1 | Thale cress | nucleus | 80.0 | 76.6 |
| AT4G25690.1 | Thale cress | nucleus | 77.22 | 72.77 |
| CDX89401 | Canola | nucleus | 74.44 | 69.43 |
| CDX94425 | Canola | nucleus | 73.89 | 69.27 |
| CDY61350 | Canola | nucleus | 75.0 | 63.98 |
| KRH38385 | Soybean | nucleus | 52.22 | 47.24 |
| PGSC0003DMT400026357 | Potato | nucleus | 51.11 | 46.0 |
| PGSC0003DMT400074347 | Potato | nucleus | 52.78 | 45.45 |
| Solyc06g036250.1.1 | Tomato | nucleus | 52.78 | 45.45 |
| Solyc03g008000.1.1 | Tomato | nucleus | 51.67 | 43.66 |
| CDX91661 | Canola | nucleus | 58.33 | 42.34 |
| CDY27057 | Canola | nucleus | 57.78 | 41.94 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 46.67 | 39.62 |
| Os02t0104200-01 | Rice | nucleus | 48.89 | 39.46 |
| KRG91581 | Soybean | nucleus | 52.22 | 39.0 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 58.33 | 38.89 |
| KRH35243 | Soybean | nucleus | 52.22 | 38.68 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 47.22 | 38.29 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 47.22 | 38.29 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 47.22 | 38.29 |
| Zm00001d014937_P001 | Maize | nucleus | 48.89 | 38.1 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 53.89 | 37.89 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 46.67 | 37.5 |
| Os06t0106900-01 | Rice | nucleus | 42.22 | 35.35 |
| TraesCSU01G065700.1 | Wheat | nucleus | 43.33 | 33.33 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 42.78 | 33.05 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 42.78 | 32.77 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 49.44 | 32.36 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 40.56 | 31.2 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 30.56 | 30.39 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 26.67 | 26.52 |
| OQU84149 | Sorghum | nucleus | 47.78 | 18.07 |
| Os02t0104100-00 | Rice | nucleus | 14.44 | 9.63 |
Protein Annotations
| EnsemblPlants:CDY01170 | EnsemblPlantsGene:GSBRNA2T00111258001 | ncoils:Coil | PANTHER:PTHR34212 | ProteinID:CDY01170 | ProteinID:CDY01170.1 |
| SEG:seg | UniParc:UPI0004EE361F | MapMan:35.2 | : | : | : |
Description
BnaA04g06490D
Coordinates
chrLK031924:+:744683..745225
Molecular Weight (calculated)
19724.3 Da
IEP (calculated)
5.732
GRAVY (calculated)
-0.554
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHCVCKQVQ SVASKLKKKK AHGKDEFDRV KQAEKKKRRL EKALATSAAI RAELEKKKQK KLEEQQRLDE EGAAIAEAVA LHVLLGEDSD GDDSSRVMLG
101: EEKGFKMDMF RGESYAVQGI GFVSNGCGLG DSNWSPFASD VWDDNMGVSA DLIAAQAVSS LHISENSDEN AFVLNGMFRG
101: EEKGFKMDMF RGESYAVQGI GFVSNGCGLG DSNWSPFASD VWDDNMGVSA DLIAAQAVSS LHISENSDEN AFVLNGMFRG
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.