Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G065700.1 | Wheat | nucleus | 88.09 | 88.46 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 84.68 | 85.41 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 80.85 | 81.2 |
| Os06t0106900-01 | Rice | nucleus | 51.49 | 56.28 |
| Zm00001d014937_P001 | Maize | nucleus | 51.91 | 52.81 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 48.09 | 50.9 |
| Bra019146.1-P | Field mustard | nucleus | 33.19 | 43.09 |
| CDY01170 | Canola | nucleus | 32.77 | 42.78 |
| CDX94428 | Canola | nucleus | 32.34 | 40.43 |
| KRH38385 | Soybean | nucleus | 34.04 | 40.2 |
| Bra013909.1-P | Field mustard | nucleus | 32.34 | 40.0 |
| CDX89403 | Canola | nucleus | 32.34 | 40.0 |
| AT4G25670.1 | Thale cress | nucleus | 31.49 | 39.36 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 35.32 | 39.15 |
| CDX94425 | Canola | nucleus | 31.91 | 39.06 |
| Bra013911.1-P | Field mustard | nucleus | 31.49 | 38.34 |
| AT4G25690.1 | Thale cress | nucleus | 31.06 | 38.22 |
| CDX89401 | Canola | nucleus | 31.06 | 37.82 |
| CDY61350 | Canola | nucleus | 31.49 | 35.07 |
| PGSC0003DMT400074347 | Potato | nucleus | 30.64 | 34.45 |
| Solyc06g036250.1.1 | Tomato | nucleus | 30.64 | 34.45 |
| PGSC0003DMT400026357 | Potato | nucleus | 28.51 | 33.5 |
| Solyc03g008000.1.1 | Tomato | nucleus | 30.21 | 33.33 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 38.3 | 32.73 |
| KRH35243 | Soybean | nucleus | 33.62 | 32.51 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 34.89 | 32.03 |
| KRG91581 | Soybean | nucleus | 32.34 | 31.54 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 35.74 | 31.11 |
| Bra022600.1-P | Field mustard | nucleus | 31.06 | 29.44 |
| CDY27057 | Canola | nucleus | 31.06 | 29.44 |
| CDX91661 | Canola | nucleus | 30.64 | 29.03 |
| OQU84149 | Sorghum | nucleus | 49.79 | 24.58 |
| AT5G52550.1 | Thale cress | nucleus | 28.94 | 18.89 |
Protein Annotations
| EMBL:AK367656 | EnsemblPlants:HORVU7Hr1G002090.1 | EnsemblPlantsGene:HORVU7Hr1G002090 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 |
| SEG:seg | UniParc:UPI0002007332 | UniProt:F2DUT8 | MapMan:35.2 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DUT8]
Coordinates
chrchr7H:+:4094645..4097230
Molecular Weight (calculated)
25955.2 Da
IEP (calculated)
7.814
GRAVY (calculated)
-0.903
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRAGGNQAG QVSKKGKKKH AKDESDRQKQ AEKKRRRLEK ALANSAAIIS ELEKKRQQKQ EEQRRLDDEG AAIAEAVALH VLIGEDCDEP RQLMWNGHRG
101: RGHRDDFVDH ERAPGAQRAG GDAYPCGSRS PLARASRSHM PQWRLTDCGM SGPFSFSSWE RMGDFEGLYC EGTPCQTDQD TYCHGGLVAA TQAVSPFGYV
201: SEDPFPAHGT EGASSINIML GGTCSNSLNI YRRQF
101: RGHRDDFVDH ERAPGAQRAG GDAYPCGSRS PLARASRSHM PQWRLTDCGM SGPFSFSSWE RMGDFEGLYC EGTPCQTDQD TYCHGGLVAA TQAVSPFGYV
201: SEDPFPAHGT EGASSINIML GGTCSNSLNI YRRQF
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.