Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27057 | Canola | nucleus | 90.32 | 90.32 |
| CDY01170 | Canola | nucleus | 42.34 | 58.33 |
| CDX89403 | Canola | nucleus | 43.95 | 57.37 |
| CDX94428 | Canola | nucleus | 42.74 | 56.38 |
| CDX89401 | Canola | nucleus | 42.34 | 54.4 |
| CDX94425 | Canola | nucleus | 41.94 | 54.17 |
| CDY61350 | Canola | nucleus | 41.53 | 48.82 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 35.08 | 48.07 |
| KRH38385 | Soybean | nucleus | 37.5 | 46.73 |
| AT5G52550.1 | Thale cress | nucleus | 66.53 | 45.83 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 31.85 | 43.65 |
| Solyc06g036250.1.1 | Tomato | nucleus | 36.69 | 43.54 |
| PGSC0003DMT400074347 | Potato | nucleus | 36.29 | 43.06 |
| PGSC0003DMT400026357 | Potato | nucleus | 33.87 | 42.0 |
| Solyc03g008000.1.1 | Tomato | nucleus | 35.48 | 41.31 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 40.32 | 39.06 |
| KRG91581 | Soybean | nucleus | 37.9 | 39.0 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 34.68 | 38.74 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 34.68 | 38.74 |
| KRH35243 | Soybean | nucleus | 37.9 | 38.68 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 34.27 | 38.29 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 41.13 | 37.78 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 33.87 | 37.5 |
| Os02t0104200-01 | Rice | nucleus | 33.47 | 37.22 |
| Zm00001d014937_P001 | Maize | nucleus | 33.87 | 36.36 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 29.84 | 34.91 |
| Os06t0106900-01 | Rice | nucleus | 27.82 | 32.09 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 29.03 | 30.64 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 33.47 | 30.18 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 28.23 | 30.04 |
| TraesCSU01G065700.1 | Wheat | nucleus | 28.23 | 29.91 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 27.02 | 28.63 |
| OQU84149 | Sorghum | nucleus | 35.89 | 18.7 |
| Os02t0104100-00 | Rice | nucleus | 10.89 | 10.0 |
Protein Annotations
| EnsemblPlants:CDX91661 | EnsemblPlantsGene:GSBRNA2T00153118001 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF1 | ProteinID:CDX91661 |
| ProteinID:CDX91661.1 | SEG:seg | UniParc:UPI0004EDEAC0 | MapMan:35.2 | : | : |
Description
BnaC02g14990D
Coordinates
chrLK031868:-:1543774..1544520
Molecular Weight (calculated)
28129.6 Da
IEP (calculated)
10.118
GRAVY (calculated)
-0.923
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSSLMRKQ DQPIVGEGKK KKKQGKDEAD RIKQAEKKKR RLEKNLAASL AIRAELEKKK QRIKEGHQEA ADEESWAKKM KQEKDELERV KRAEKKKIRL
101: EKSLANSAAI RAELEKKKLK KLEEQRRLDE EGAAIAEAAA LHVLLGEDSD DSCRTMLNQE TGFKPWDCIA KLDLSTSGRN GFFPHQAVHR SRVRDCNWSL
201: SYEPSARGWD NSNMGLSADL IAAQAVSSLQ ISENAIVDAV VFNGMFRR
101: EKSLANSAAI RAELEKKKLK KLEEQRRLDE EGAAIAEAAA LHVLLGEDSD DSCRTMLNQE TGFKPWDCIA KLDLSTSGRN GFFPHQAVHR SRVRDCNWSL
201: SYEPSARGWD NSNMGLSADL IAAQAVSSLQ ISENAIVDAV VFNGMFRR
001: MDSSSSMCKQ AQPIVRKARK KKVKGVVDPI KQAEKKNRRL EKAIATSAAI RAELEKKKQM KKEGQLEAAD EEDSADAAKK KQERDELERI KQAENKKNRL
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
Arabidopsis Description
AT5g52550/F6N7_3 [Source:UniProtKB/TrEMBL;Acc:Q940C2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.