Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91661 | Canola | nucleus | 45.83 | 66.53 |
| Bra022600.1-P | Field mustard | nucleus | 44.44 | 64.52 |
| CDY27057 | Canola | nucleus | 44.44 | 64.52 |
| AT4G25670.1 | Thale cress | nucleus | 28.33 | 54.26 |
| AT4G25690.1 | Thale cress | nucleus | 28.06 | 52.88 |
| KRH38385 | Soybean | nucleus | 24.72 | 44.72 |
| Solyc06g036250.1.1 | Tomato | nucleus | 25.28 | 43.54 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 21.67 | 43.09 |
| PGSC0003DMT400074347 | Potato | nucleus | 25.0 | 43.06 |
| PGSC0003DMT400026357 | Potato | nucleus | 23.06 | 41.5 |
| Solyc03g008000.1.1 | Tomato | nucleus | 24.17 | 40.85 |
| KRG91581 | Soybean | nucleus | 25.56 | 38.17 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 19.17 | 38.12 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 28.33 | 37.78 |
| KRH35243 | Soybean | nucleus | 25.28 | 37.45 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 26.11 | 36.72 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 20.83 | 35.38 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 21.67 | 35.14 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 21.39 | 34.68 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 21.39 | 34.68 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 21.39 | 34.38 |
| Zm00001d014937_P001 | Maize | nucleus | 21.11 | 32.9 |
| Os02t0104200-01 | Rice | nucleus | 20.28 | 32.74 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 23.06 | 30.18 |
| Os06t0106900-01 | Rice | nucleus | 17.5 | 29.3 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 18.89 | 28.94 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 18.33 | 28.33 |
| TraesCSU01G065700.1 | Wheat | nucleus | 17.78 | 27.35 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 17.22 | 26.5 |
| OQU84149 | Sorghum | nucleus | 25.83 | 19.54 |
| Os02t0104100-00 | Rice | nucleus | 8.33 | 11.11 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835332 | ProteinID:AED96232.1 | ArrayExpress:AT5G52550 | EnsemblPlantsGene:AT5G52550 | RefSeq:AT5G52550 |
| TAIR:AT5G52550 | RefSeq:AT5G52550-TAIR-G | EnsemblPlants:AT5G52550.1 | TAIR:AT5G52550.1 | EMBL:AY056121 | EMBL:AY078034 |
| Unigene:At.8979 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | RefSeq:NP_568774.1 |
| PO:PO:0000293 | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF1 | UniProt:Q940C2 | UniParc:UPI000009F092 | SEG:seg |
Description
AT5g52550/F6N7_3 [Source:UniProtKB/TrEMBL;Acc:Q940C2]
Coordinates
chr5:-:21327712..21330136
Molecular Weight (calculated)
41044.8 Da
IEP (calculated)
10.167
GRAVY (calculated)
-1.013
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSMCKQ AQPIVRKARK KKVKGVVDPI KQAEKKNRRL EKAIATSAAI RAELEKKKQM KKEGQLEAAD EEDSADAAKK KQERDELERI KQAENKKNRL
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.