Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G014300.1 | Wheat | nucleus | 86.19 | 86.19 |
| Bra022600.1-P | Field mustard | nucleus | 46.41 | 33.87 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 40.88 | 33.33 |
| CDY27057 | Canola | nucleus | 44.75 | 32.66 |
| CDX91661 | Canola | nucleus | 43.65 | 31.85 |
| Zm00001d014937_P001 | Maize | nucleus | 35.91 | 28.14 |
| CDX94428 | Canola | nucleus | 28.18 | 27.13 |
| Bra013909.1-P | Field mustard | nucleus | 28.18 | 26.84 |
| CDX89403 | Canola | nucleus | 28.18 | 26.84 |
| CDY01170 | Canola | nucleus | 26.52 | 26.67 |
| Bra019146.1-P | Field mustard | nucleus | 26.52 | 26.52 |
| Solyc06g036250.1.1 | Tomato | nucleus | 29.83 | 25.84 |
| PGSC0003DMT400074347 | Potato | nucleus | 29.83 | 25.84 |
| AT4G25690.1 | Thale cress | nucleus | 27.07 | 25.65 |
| CDX94425 | Canola | nucleus | 27.07 | 25.52 |
| PGSC0003DMT400026357 | Potato | nucleus | 28.18 | 25.5 |
| Bra013911.1-P | Field mustard | nucleus | 27.07 | 25.39 |
| KRH38385 | Soybean | nucleus | 27.62 | 25.13 |
| AT4G25670.1 | Thale cress | nucleus | 25.97 | 25.0 |
| CDX89401 | Canola | nucleus | 26.52 | 24.87 |
| Solyc03g008000.1.1 | Tomato | nucleus | 28.18 | 23.94 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 30.94 | 23.93 |
| KRG91581 | Soybean | nucleus | 31.49 | 23.65 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 27.62 | 23.58 |
| KRH35243 | Soybean | nucleus | 31.49 | 23.46 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 34.25 | 22.96 |
| CDY61350 | Canola | nucleus | 26.52 | 22.75 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 31.49 | 22.27 |
| AT5G52550.1 | Thale cress | nucleus | 38.12 | 19.17 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 28.73 | 18.91 |
| OQU84149 | Sorghum | nucleus | 38.67 | 14.71 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G011500.1 | EnsemblPlantsGene:TraesCS6A01G011500 | ncoils:Coil | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6A:-:5323451..5324485
Molecular Weight (calculated)
20866.1 Da
IEP (calculated)
10.416
GRAVY (calculated)
-1.235
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLRDKTETG EGKDFLVPIN QAGKVLKKGR KKQELDRQKQ AEKKRRRLEK ALANSAAIIS QLGKRKHNNK KEEQERLDEE EVVSKKNDEP DRQKQAGKKR
101: TRLEKLLANS AAIISELEKR KQKKKEEQEM LDMQVASITD AVAIHVRIGG ESDESRHLVL NRHRKCNDWD PDAGLNLHME M
101: TRLEKLLANS AAIISELEKR KQKKKEEQEM LDMQVASITD AVAIHVRIGG ESDESRHLVL NRHRKCNDWD PDAGLNLHME M
001: MDSSSSMCKQ AQPIVRKARK KKVKGVVDPI KQAEKKNRRL EKAIATSAAI RAELEKKKQM KKEGQLEAAD EEDSADAAKK KQERDELERI KQAENKKNRL
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
101: EKSIATSAAI MAELEKKKLR KLEEQKRLAE EGAAIAEKKK RRLEKAIATT AAIRAELEKK KQMKKEGQLD AAVEEDSAYA AKKKQEREEL ERIKQAERKK
201: RRIEKSIATS AAIRAELEKK KLRKLEEQRR LDEEGAAIAE AVALHVLLGE DCDDSYRNTL NQETGFKPWD YTTKINLFSG GINRFFPHQR CSSYAVHDNN
301: RTRDSNWSSV SYEPFARGWD NNNNNMGISA DLFDTQAVSS LQISENTDVD AIVFNGMFRR
Arabidopsis Description
AT5g52550/F6N7_3 [Source:UniProtKB/TrEMBL;Acc:Q940C2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.