Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013909.1-P | Field mustard | nucleus | 99.47 | 99.47 |
| CDX94428 | Canola | nucleus | 95.79 | 96.81 |
| AT4G25670.1 | Thale cress | nucleus | 82.11 | 82.98 |
| CDY01170 | Canola | nucleus | 77.37 | 81.67 |
| CDX89401 | Canola | nucleus | 82.11 | 80.83 |
| CDX94425 | Canola | nucleus | 80.53 | 79.69 |
| AT4G25690.1 | Thale cress | nucleus | 80.0 | 79.58 |
| CDY61350 | Canola | nucleus | 76.84 | 69.19 |
| PGSC0003DMT400026357 | Potato | nucleus | 51.05 | 48.5 |
| Solyc06g036250.1.1 | Tomato | nucleus | 52.63 | 47.85 |
| PGSC0003DMT400074347 | Potato | nucleus | 52.11 | 47.37 |
| KRH38385 | Soybean | nucleus | 48.95 | 46.73 |
| Solyc03g008000.1.1 | Tomato | nucleus | 51.05 | 45.54 |
| CDX91661 | Canola | nucleus | 57.37 | 43.95 |
| CDY27057 | Canola | nucleus | 55.79 | 42.74 |
| Zm00001d014937_P001 | Maize | nucleus | 48.42 | 39.83 |
| Os02t0104200-01 | Rice | nucleus | 46.32 | 39.46 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 43.68 | 39.15 |
| KRG91581 | Soybean | nucleus | 49.47 | 39.0 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 55.26 | 38.89 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 45.26 | 38.74 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 45.26 | 38.74 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 44.74 | 38.29 |
| KRH35243 | Soybean | nucleus | 48.95 | 38.27 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 44.74 | 37.95 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 50.0 | 37.11 |
| Os06t0106900-01 | Rice | nucleus | 41.05 | 36.28 |
| TraesCSU01G065700.1 | Wheat | nucleus | 40.53 | 32.91 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 40.0 | 32.34 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 39.47 | 32.19 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 30.0 | 31.49 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 45.26 | 31.27 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 37.89 | 30.77 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 26.84 | 28.18 |
| OQU84149 | Sorghum | nucleus | 46.32 | 18.49 |
| Os02t0104100-00 | Rice | nucleus | 13.68 | 9.63 |
Protein Annotations
| EnsemblPlants:CDX89403 | EnsemblPlantsGene:GSBRNA2T00149642001 | ncoils:Coil | PANTHER:PTHR34212 | ProteinID:CDX89403 | ProteinID:CDX89403.1 |
| SEG:seg | UniParc:UPI0004EE6B7D | MapMan:35.2 | : | : | : |
Description
BnaA01g14900D
Coordinates
chrLK031858:+:1436624..1437422
Molecular Weight (calculated)
21090.0 Da
IEP (calculated)
9.477
GRAVY (calculated)
-0.682
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNAVCKQVQ PIARKGKSKK HNGKDEFDRV KQAEKKKRRL EKALANSAAI RAELEKKKQR KLEEQQRLDE EGAAIAEAVA LHVLLGEDSD DSSRVMLGQE
101: KGCFKMDLFT GERTNYVPRQ SCASYAVQGI GFVSNGYGLG DSNWSPFTRE SWDSNMGVSA DLIAAQAVSS LRISENTDRN AFVLKGMFRG
101: KGCFKMDLFT GERTNYVPRQ SCASYAVQGI GFVSNGYGLG DSNWSPFTRE SWDSNMGVSA DLIAAQAVSS LRISENTDRN AFVLKGMFRG
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.