Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G016200.1 | Wheat | nucleus | 90.17 | 90.56 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 88.46 | 88.09 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 85.9 | 85.9 |
| Os06t0106900-01 | Rice | nucleus | 52.14 | 56.74 |
| Zm00001d014937_P001 | Maize | nucleus | 50.85 | 51.52 |
| Bra019146.1-P | Field mustard | nucleus | 33.76 | 43.65 |
| CDY01170 | Canola | nucleus | 33.33 | 43.33 |
| CDX94428 | Canola | nucleus | 32.91 | 40.96 |
| Bra013909.1-P | Field mustard | nucleus | 32.91 | 40.53 |
| CDX89403 | Canola | nucleus | 32.91 | 40.53 |
| KRH38385 | Soybean | nucleus | 34.19 | 40.2 |
| AT4G25670.1 | Thale cress | nucleus | 32.05 | 39.89 |
| CDX94425 | Canola | nucleus | 32.05 | 39.06 |
| AT4G25690.1 | Thale cress | nucleus | 31.62 | 38.74 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 35.04 | 38.68 |
| Bra013911.1-P | Field mustard | nucleus | 31.62 | 38.34 |
| CDX89401 | Canola | nucleus | 31.2 | 37.82 |
| CDY61350 | Canola | nucleus | 31.62 | 35.07 |
| Solyc06g036250.1.1 | Tomato | nucleus | 30.77 | 34.45 |
| PGSC0003DMT400074347 | Potato | nucleus | 30.77 | 34.45 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 39.32 | 33.45 |
| Solyc03g008000.1.1 | Tomato | nucleus | 30.34 | 33.33 |
| PGSC0003DMT400026357 | Potato | nucleus | 28.21 | 33.0 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 35.04 | 32.03 |
| KRH35243 | Soybean | nucleus | 32.05 | 30.86 |
| KRG91581 | Soybean | nucleus | 31.62 | 30.71 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 35.04 | 30.37 |
| Bra022600.1-P | Field mustard | nucleus | 30.34 | 28.63 |
| CDY27057 | Canola | nucleus | 30.34 | 28.63 |
| CDX91661 | Canola | nucleus | 29.91 | 28.23 |
| OQU84149 | Sorghum | nucleus | 49.15 | 24.16 |
| AT5G52550.1 | Thale cress | nucleus | 27.35 | 17.78 |
Protein Annotations
| EnsemblPlants:TraesCSU01G065700.1 | EnsemblPlantsGene:TraesCSU01G065700 | ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:51198929..51199633
Molecular Weight (calculated)
25635.8 Da
IEP (calculated)
7.570
GRAVY (calculated)
-0.924
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRAGGNQAG QVSKKGKKKH AKDESDRQKQ AEKKRRRLEK ALANSAAIIS ELEKKRQQKQ EEQRRLDDEG AAIAEAVALH VLIGEDCDEP RQLMWNGHRG
101: RGHRGDFVDH EPAPGAQGAG GDAYPYGSRS PLARASRPHM PQWRLTDCGM SGPFSFSSWE RMGDFEGLYC EGTPCQTDQD TYCHGLVAAT QAASPFGYGS
201: EDPFPAHGTE GASSINIMLG GGTSNSLNIY RRQF
101: RGHRGDFVDH EPAPGAQGAG GDAYPYGSRS PLARASRPHM PQWRLTDCGM SGPFSFSSWE RMGDFEGLYC EGTPCQTDQD TYCHGLVAAT QAASPFGYGS
201: EDPFPAHGTE GASSINIMLG GGTSNSLNIY RRQF
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.