Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89401 | Canola | nucleus | 99.48 | 99.48 |
| Bra013909.1-P | Field mustard | nucleus | 81.87 | 83.16 |
| AT4G25670.1 | Thale cress | nucleus | 77.72 | 79.79 |
| AT4G25690.1 | Thale cress | nucleus | 76.68 | 77.49 |
| Bra019146.1-P | Field mustard | nucleus | 68.91 | 73.48 |
| PGSC0003DMT400026357 | Potato | nucleus | 49.22 | 47.5 |
| Solyc06g036250.1.1 | Tomato | nucleus | 50.78 | 46.89 |
| PGSC0003DMT400074347 | Potato | nucleus | 50.26 | 46.41 |
| Solyc03g008000.1.1 | Tomato | nucleus | 50.26 | 45.54 |
| KRH38385 | Soybean | nucleus | 46.11 | 44.72 |
| Bra022600.1-P | Field mustard | nucleus | 54.92 | 42.74 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 44.04 | 40.09 |
| Os02t0104200-01 | Rice | nucleus | 45.08 | 39.01 |
| Zm00001d014937_P001 | Maize | nucleus | 46.63 | 38.96 |
| KRG91581 | Soybean | nucleus | 47.67 | 38.17 |
| KRH35243 | Soybean | nucleus | 47.67 | 37.86 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 43.52 | 37.84 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 43.52 | 37.84 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 43.52 | 37.84 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 43.52 | 37.5 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 51.81 | 37.04 |
| Os06t0106900-01 | Rice | nucleus | 40.41 | 36.28 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 47.15 | 35.55 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 46.11 | 32.36 |
| TraesCSU01G065700.1 | Wheat | nucleus | 38.34 | 31.62 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 38.34 | 31.49 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 37.82 | 31.33 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 29.02 | 30.94 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 35.75 | 29.49 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 25.39 | 27.07 |
| OQU84149 | Sorghum | nucleus | 45.08 | 18.28 |
| Os02t0104100-00 | Rice | nucleus | 14.51 | 10.37 |
Protein Annotations
Description
AT4G25670 (E=3e-060) | unknown protein
Coordinates
chrA01:-:8404268..8404849
Molecular Weight (calculated)
21546.5 Da
IEP (calculated)
9.201
GRAVY (calculated)
-0.771
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHVVCKQVQ PLARKGKKKH NGKDEFDRVK QAEKKKRRLE KALANSAAIR AELEKKKQRK LEEQQRLDEE GAAIAEAAAL HVLLGEDSDD GFMLGEGKCC
101: KIDLFRGERT NYVPRQSCAS YAVQGGIGFQ TNGYGRGDSN WSVPYNPSMR GAWDNNNNMG ISADLIAAQV VSSLHISENN DRNAFVFNRM FQG
101: KIDLFRGERT NYVPRQSCAS YAVQGGIGFQ TNGYGRGDSN WSVPYNPSMR GAWDNNNNMG ISADLIAAQV VSSLHISENN DRNAFVFNRM FQG
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.