Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25670.1 | Thale cress | nucleus | 86.91 | 88.3 |
| Bra013909.1-P | Field mustard | nucleus | 80.1 | 80.53 |
| CDX94428 | Canola | nucleus | 79.06 | 80.32 |
| CDX89403 | Canola | nucleus | 79.58 | 80.0 |
| CDY01170 | Canola | nucleus | 72.77 | 77.22 |
| CDX89401 | Canola | nucleus | 78.01 | 77.2 |
| CDX94425 | Canola | nucleus | 77.49 | 77.08 |
| Bra013911.1-P | Field mustard | nucleus | 77.49 | 76.68 |
| Bra019146.1-P | Field mustard | nucleus | 72.25 | 76.24 |
| CDY61350 | Canola | nucleus | 74.87 | 67.77 |
| PGSC0003DMT400026357 | Potato | nucleus | 53.4 | 51.0 |
| Solyc06g036250.1.1 | Tomato | nucleus | 54.97 | 50.24 |
| PGSC0003DMT400074347 | Potato | nucleus | 54.45 | 49.76 |
| Solyc03g008000.1.1 | Tomato | nucleus | 54.45 | 48.83 |
| KRH38385 | Soybean | nucleus | 50.26 | 48.24 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 45.03 | 40.57 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 56.54 | 40.0 |
| Os02t0104200-01 | Rice | nucleus | 46.6 | 39.91 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 45.03 | 38.74 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 45.03 | 38.74 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 45.03 | 38.74 |
| KRH35243 | Soybean | nucleus | 49.21 | 38.68 |
| KRG91581 | Soybean | nucleus | 48.69 | 38.59 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 44.5 | 37.95 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 50.79 | 37.89 |
| Zm00001d014937_P001 | Maize | nucleus | 45.55 | 37.66 |
| Os06t0106900-01 | Rice | nucleus | 39.27 | 34.88 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 47.64 | 33.09 |
| TraesCSU01G065700.1 | Wheat | nucleus | 38.74 | 31.62 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 29.84 | 31.49 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 38.22 | 31.33 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 38.22 | 31.06 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 36.65 | 29.91 |
| AT5G52550.1 | Thale cress | nucleus | 52.88 | 28.06 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 25.65 | 27.07 |
| OQU84149 | Sorghum | nucleus | 44.5 | 17.86 |
| Os02t0104100-00 | Rice | nucleus | 15.18 | 10.74 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828674 | UniProt:A0A178UW84 | ProteinID:AEE85096.1 | ProteinID:AEE85097.1 | EMBL:AK317206 |
| ArrayExpress:AT4G25690 | EnsemblPlantsGene:AT4G25690 | RefSeq:AT4G25690 | TAIR:AT4G25690 | RefSeq:AT4G25690-TAIR-G | EnsemblPlants:AT4G25690.1 |
| TAIR:AT4G25690.1 | EMBL:AY065035 | Unigene:At.28280 | EMBL:BT015913 | ProteinID:CAB43700.1 | ProteinID:CAB81379.1 |
| ncoils:Coil | RefSeq:NP_194299.1 | RefSeq:NP_974617.1 | ProteinID:OAO98118.1 | PO:PO:0000293 | PANTHER:PTHR34212 |
| PANTHER:PTHR34212:SF1 | UniProt:Q9SZZ7 | UniParc:UPI00000A197A | SEG:seg | : | : |
Description
AT4G25690 protein [Source:UniProtKB/TrEMBL;Acc:Q9SZZ7]
Coordinates
chr4:-:13090209..13091798
Molecular Weight (calculated)
21429.3 Da
IEP (calculated)
6.291
GRAVY (calculated)
-0.592
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHTLCKQVV QPVTRKVKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEETG
101: FGMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSVSYKPFMK DVWDNNMVIS ADLIAAQAVS SLQISEDADR NAYVFETMFG G
101: FGMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSVSYKPFMK DVWDNNMVIS ADLIAAQAVS SLQISEDADR NAYVFETMFG G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.