Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52550.1 | Zm00001d004812_P002 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | Zm00001d023560_P002 | AT1G35670.1 | 19130088 |
| AT5G52550.1 | Zm00001d053016_P002 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0104200-01 | Rice | nucleus | 74.46 | 77.13 |
| TraesCS6A01G011600.1 | Wheat | nucleus | 71.43 | 74.32 |
| TraesCS6D01G014400.1 | Wheat | nucleus | 71.0 | 73.87 |
| HORVU6Hr1G002230.1 | Barley | nucleus | 70.56 | 73.42 |
| TraesCS6B01G017800.1 | Wheat | nucleus | 70.13 | 72.32 |
| Os06t0106900-01 | Rice | nucleus | 55.41 | 59.53 |
| HORVU7Hr1G002090.1 | Barley | nucleus | 52.81 | 51.91 |
| TraesCSU01G065700.1 | Wheat | nucleus | 51.52 | 50.85 |
| TraesCS7D01G016200.1 | Wheat | nucleus | 50.65 | 50.21 |
| CDY01170 | Canola | nucleus | 38.1 | 48.89 |
| Bra019146.1-P | Field mustard | nucleus | 38.1 | 48.62 |
| Bra013909.1-P | Field mustard | nucleus | 39.83 | 48.42 |
| CDX89403 | Canola | nucleus | 39.83 | 48.42 |
| CDX94428 | Canola | nucleus | 39.39 | 48.4 |
| TraesCS7A01G019200.1 | Wheat | nucleus | 48.92 | 48.29 |
| GSMUA_Achr2P04280_001 | Banana | nucleus | 44.16 | 48.11 |
| CDX94425 | Canola | nucleus | 39.39 | 47.4 |
| Bra013911.1-P | Field mustard | nucleus | 38.96 | 46.63 |
| CDX89401 | Canola | nucleus | 38.53 | 46.11 |
| PGSC0003DMT400026357 | Potato | nucleus | 39.83 | 46.0 |
| AT4G25670.1 | Thale cress | nucleus | 37.23 | 45.74 |
| AT4G25690.1 | Thale cress | nucleus | 37.66 | 45.55 |
| KRH38385 | Soybean | nucleus | 38.96 | 45.23 |
| Solyc03g008000.1.1 | Tomato | nucleus | 41.13 | 44.6 |
| PGSC0003DMT400074347 | Potato | nucleus | 39.83 | 44.02 |
| Solyc06g036250.1.1 | Tomato | nucleus | 39.83 | 44.02 |
| CDY61350 | Canola | nucleus | 38.96 | 42.65 |
| OQU84149 | Sorghum | nucleus | 86.58 | 42.02 |
| TraesCS6D01G014300.1 | Wheat | nucleus | 32.03 | 40.88 |
| GSMUA_Achr1P06450_001 | Banana | cytosol, golgi, nucleus | 46.32 | 38.91 |
| KRH35243 | Soybean | nucleus | 39.39 | 37.45 |
| KRH08864 | Soybean | extracellular, mitochondrion, plastid | 40.69 | 36.72 |
| KRG91581 | Soybean | nucleus | 37.66 | 36.1 |
| TraesCS6A01G011500.1 | Wheat | nucleus | 28.14 | 35.91 |
| VIT_16s0050g01060.t01 | Wine grape | golgi | 41.13 | 35.19 |
| CDX91661 | Canola | nucleus | 36.36 | 33.87 |
| Bra022600.1-P | Field mustard | nucleus | 35.93 | 33.47 |
| CDY27057 | Canola | nucleus | 35.5 | 33.06 |
| AT5G52550.1 | Thale cress | nucleus | 32.9 | 21.11 |
Protein Annotations
| EMBL:BT067854 | EMBL:EU956483 | EnsemblPlants:Zm00001d014937_P001 | EnsemblPlants:Zm00001d014937_T001 | EnsemblPlantsGene:Zm00001d014937 | EntrezGene:100275520 |
| ncoils:Coil | PANTHER:PTHR34212 | PANTHER:PTHR34212:SF2 | ProteinID:AQK67660.1 | SEG:seg | UniParc:UPI000182B116 |
| UniProt:B6SUR8 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:69071354..69072049
Molecular Weight (calculated)
25362.0 Da
IEP (calculated)
8.479
GRAVY (calculated)
-0.645
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRATMSSNQ AGKVLKKGKK KQAKDELDRQ KQAEKKRRRL EKALANSAAI ISELEKKKQQ KKEEQQRLDE EGAAIAEAVA LHVLIGEDSD EPCHLMLNKH
101: HIRCNHWAPS AAFEFTVDAQ PAEVYPSEDG LVCGSHAYAP RAPKGRRADW GIGQALPCWG EVSDLQGPYY QGTFRQSVTC PGFIAAQAVS SLQIREESPE
201: VTSPSHGADA AATVVNRMLG GTSRLNLYRG I
101: HIRCNHWAPS AAFEFTVDAQ PAEVYPSEDG LVCGSHAYAP RAPKGRRADW GIGQALPCWG EVSDLQGPYY QGTFRQSVTC PGFIAAQAVS SLQIREESPE
201: VTSPSHGADA AATVVNRMLG GTSRLNLYRG I
001: MDHTVCKQVQ PVVRKAKKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEEKG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
101: FTMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSPFTRRGAW DNNMGISADL IAAQAVSALQ ISENADGNAF VFNGMFRG
Arabidopsis Description
AT4g25670/L73G19_50 [Source:UniProtKB/TrEMBL;Acc:Q94BX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.