Factsheet for TraesCS1B01G077100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G363100.1	Wheat	cytosol, peroxisome, plastid	40.42	49.01
TraesCS3B01G508400.1	Wheat	cytosol	38.78	46.37
TraesCS6B01G438000.1	Wheat	cytosol, plastid	41.12	43.14
TraesCS3B01G507700.1	Wheat	endoplasmic reticulum, golgi	42.99	42.89
TraesCS3B01G507800.1	Wheat	cytosol, plasma membrane, plastid	38.55	41.98
TraesCS3B01G507400.1	Wheat	cytosol	36.92	39.21
Zm00001d021115_P001	Maize	cytosol	27.34	38.74
TraesCS3B01G507200.1	Wheat	cytosol	16.12	37.5
Zm00001d021117_P001	Maize	cytosol, plastid	27.57	35.33
Zm00001d021099_P001	Maize	cytosol, vacuole	27.1	34.73
Zm00001d021097_P001	Maize	cytosol	30.37	34.67
Zm00001d021107_P001	Maize	cytosol	29.44	34.62
TraesCS1B01G127800.1	Wheat	plasma membrane	29.91	33.51
TraesCS4B01G058700.1	Wheat	plastid	34.35	33.18
Zm00001d021103_P001	Maize	cytosol	21.73	30.49
TraesCS3B01G572600.1	Wheat	peroxisome	23.13	30.37
TraesCS5B01G447400.1	Wheat	cytosol, plastid	31.54	29.93
TraesCS1B01G110300.1	Wheat	cytosol	23.13	27.89
EES02090	Sorghum	cytosol	24.53	25.36
TraesCS3B01G560000.1	Wheat	cytosol	21.96	23.33
TraesCS3B01G559900.1	Wheat	cytosol	21.26	22.52
TraesCS6B01G450800.1	Wheat	mitochondrion	22.9	22.43
TraesCS3B01G560700.1	Wheat	cytosol	17.76	19.34
TraesCS3B01G585500.1	Wheat	cytosol, mitochondrion	13.55	19.27
TraesCS3B01G597100.1	Wheat	mitochondrion, plastid	13.08	18.6
TraesCS3B01G553300.1	Wheat	cytosol	16.12	18.55
TraesCS3B01G560200.1	Wheat	cytosol	15.19	16.62
TraesCS3B01G562600.1	Wheat	peroxisome	15.19	16.46
TraesCS6B01G350200.1	Wheat	cytosol	14.02	16.44
TraesCS3B01G536000.1	Wheat	cytosol	14.25	15.97

Protein Annotations

EnsemblPlants:TraesCS1B01G077100.1	EnsemblPlantsGene:TraesCS1B01G077100	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478	SEG:seg
SUPFAM:SSF81383	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:59630603..59631889

Molecular Weight (calculated)

47858.3 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.049

Length

428 amino acids

Sequence
(BLAST)

001: MSQELERAAV TAMAPDEVPT PLATPVLPLA KRMKEDPAVP AMATEDCSRW STLPPELLRL IAESLLGTND VDCYVDFRAV CPSWRAATDD PKDNTSDRRF
101: HPRRWIVLDQ VFQSEGDFFL LNTDTGRFVH RKLPLLSEHY VVATTYSGYV VLADKSPPHV ASVLNPLTGV VVRFAMTVPP DVGVAHVVLS GGGSLRTLIL
201: VGNSSRTHYM AGPDNQDFTT VHMASPDYDL LFKAAVGGGV YTYLNPYLDG EHYTYLNPYV EGVLTVIYNF LGTYRFDPLK FFSGHGNYDR GFLVGLAGHM
301: LLIFKPSGIH YPCVLRFDNA THQLMLVQRI GKYAIFVGHQ RCLAVDSDKF PGVEENCVYY TQHLGSSAFI YKCNIADKKV ERIFESDDFV RQDKQFVLVA
401: DRPFTIIHIL SSYTINIPDS QLASQQMP

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.