Factsheet for TraesCS3B01G560700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G498000.1	Wheat	cytosol	89.06	89.06
TraesCSU01G057900.1	Wheat	cytosol	69.21	68.86
TraesCS3B01G560200.1	Wheat	cytosol	31.81	31.97
TraesCS3B01G562600.1	Wheat	peroxisome	30.28	30.13
TraesCS3B01G536000.1	Wheat	cytosol	28.5	29.32
TraesCS3B01G553300.1	Wheat	cytosol	27.74	29.3
TraesCS6B01G350200.1	Wheat	cytosol	24.94	26.85
TraesCS3B01G507400.1	Wheat	cytosol	22.14	21.59
TraesCS2B01G363100.1	Wheat	cytosol, peroxisome, plastid	19.34	21.53
TraesCS3B01G508400.1	Wheat	cytosol	18.83	20.67
TraesCS3B01G572600.1	Wheat	peroxisome	16.79	20.25
TraesCS1B01G127800.1	Wheat	plasma membrane	19.34	19.9
TraesCS3B01G507800.1	Wheat	cytosol, plasma membrane, plastid	19.85	19.85
TraesCS3B01G507700.1	Wheat	endoplasmic reticulum, golgi	20.36	18.65
KXG34167	Sorghum	cytosol	15.01	18.61
TraesCS4B01G058700.1	Wheat	plastid	20.1	17.83
TraesCS1B01G077100.1	Wheat	cytosol	19.34	17.76
TraesCS5B01G447400.1	Wheat	cytosol, plastid	20.1	17.52
TraesCS1B01G110300.1	Wheat	cytosol	15.78	17.46
TraesCS6B01G450800.1	Wheat	mitochondrion	18.83	16.93
OQU88199	Sorghum	cytosol, extracellular, plastid	11.96	16.04
TraesCS3B01G559900.1	Wheat	cytosol	15.78	15.35
Os03t0783800-00	Rice	nucleus	15.01	15.29
TraesCS6B01G438000.1	Wheat	cytosol, plastid	15.52	14.95
TraesCS3B01G560000.1	Wheat	cytosol	14.5	14.14
TraesCS3B01G507200.1	Wheat	cytosol	4.83	10.33
TraesCS3B01G597100.1	Wheat	mitochondrion, plastid	5.85	7.64
TraesCS3B01G585500.1	Wheat	cytosol, mitochondrion	5.34	6.98

Protein Annotations

EnsemblPlants:TraesCS3B01G560700.1	EnsemblPlantsGene:TraesCS3B01G560700	Gene3D:1.20.1280.50	InterPro:DUF295	PANTHER:PTHR33165	PFAM:PF03478
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:794597625..794598806

Molecular Weight (calculated)

43476.4 Da

IEP (calculated)

9.141

GRAVY (calculated)

0.033

Length

393 amino acids

Sequence
(BLAST)

001: MADWSALPAD LVRSVADRLL AAAGDVDYYM GMRAVCHSWR LAIADPCGGA GLHRFRPRHW IMLDDAAEQQ PVHDEGGVRL FLNVATGRVL RLRVPLLRDH
101: VLVAASDGFL VLGDKKYPHR ASVLNPFTGS LVRFVAAIPR VNRVRAVVTG SEDDRSLSLV FSFYHDPCSD AITCAHPTAA RLSPVQLPYY VGAGPFYSLK
201: QENMVAYRGH VYVAYRDGLI VRFVAPSAQH HQHCHAKLIV SAVPSSDYTG RFGRAFLVAS GGDLLLVRLY HLRRRRAVEV FRVDVKRKAP LEPVRSIGRH
301: ALFLGGRSLS VNAVELPSVD GDCVYLASEN RNVAWRYDLR DGSETMISSF DARPFGLVQV LLNYCVVLPD AKAQLHSVYR TECLLSVQSS GSD

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.