Factsheet for TraesCS5B01G447400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G442900.1	Wheat	cytosol	83.37	82.46
TraesCS1B01G127800.1	Wheat	plasma membrane	53.66	63.35
TraesCS3B01G507400.1	Wheat	cytosol	33.92	37.97
TraesCS4B01G058700.1	Wheat	plastid	36.81	37.47
TraesCS3B01G507800.1	Wheat	cytosol, plasma membrane, plastid	30.6	35.11
TraesCS3B01G508400.1	Wheat	cytosol	26.61	33.52
TraesCS3B01G507200.1	Wheat	cytosol	13.3	32.61
TraesCS3B01G572600.1	Wheat	peroxisome	23.28	32.21
KXG34167	Sorghum	cytosol	22.39	31.86
TraesCS1B01G077100.1	Wheat	cytosol	29.93	31.54
OQU88199	Sorghum	cytosol, extracellular, plastid	20.18	31.06
TraesCS2B01G363100.1	Wheat	cytosol, peroxisome, plastid	23.95	30.59
TraesCS1B01G110300.1	Wheat	cytosol	23.95	30.42
TraesCS3B01G507700.1	Wheat	endoplasmic reticulum, golgi	27.49	28.9
TraesCS6B01G438000.1	Wheat	cytosol, plastid	25.5	28.19
TraesCS6B01G450800.1	Wheat	mitochondrion	23.95	24.71
Os03t0783800-00	Rice	nucleus	20.4	23.83
TraesCS3B01G560000.1	Wheat	cytosol	21.29	23.82
TraesCS3B01G559900.1	Wheat	cytosol	21.29	23.76
TraesCS3B01G597100.1	Wheat	mitochondrion, plastid	13.53	20.27
TraesCS3B01G560700.1	Wheat	cytosol	17.52	20.1
TraesCS3B01G585500.1	Wheat	cytosol, mitochondrion	13.3	19.93
TraesCS3B01G560200.1	Wheat	cytosol	16.41	18.93
TraesCS3B01G536000.1	Wheat	cytosol	15.52	18.32
TraesCS3B01G553300.1	Wheat	cytosol	14.63	17.74
TraesCS3B01G562600.1	Wheat	peroxisome	15.3	17.47
TraesCS6B01G350200.1	Wheat	cytosol	11.97	14.79

Protein Annotations

EnsemblPlants:TraesCS5B01G447400.1	EnsemblPlantsGene:TraesCS5B01G447400	InterPro:DUF295	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:618468565..618470083

Molecular Weight (calculated)

49820.9 Da

IEP (calculated)

7.234

GRAVY (calculated)

-0.144

Length

451 amino acids

Sequence
(BLAST)

001: MLHVEHTNPH SQIRKPRRPN ASHPPRAAPP PRRSAAMEDT QRWASLMPEL VDRVANLLLD TADVDCYMAL RAVCHSWRAA TADPGGTLEP RFRPRGWVML
101: DYPSHGVDAR LLVNTATGRF HGRRMPLLRA YFVVSVTADG LLVLAARDPP HAACVLHPFT GHMVRFAARM RAHVLAAAVS GSAPPYLVLY CQDTMKLYRA
201: APDSKEFVRY KKRHAYPLVR KAVQGLVAVD GHQGQLRPLP PAVVAKIADL MSPFNDVPAD VPAEEIDTAS WKRCFVVESA GETLVVFKLE SRVEVFKMDM
301: AASTLERVKS IGSHAIFAGG CHRCVCLDAD KFPSIEANCV YFTDRLGSES TDMYRLNEND GEQCESVVMS AASGGAPSVK LNLPAFLCHP MTAHPFTIIQ
401: LLSIYAFNMQ SGQVTQVVEE EDRILEKLRT GEMSFSDLLR SCQADSDDAD D

Best Arabidopsis Sequence Match ( AT2G04810.1 )
(BLAST)

001: METCNGLMRK NKRQKVSRNS DWSKLCPDVL RKIYETLRSP VDSHRAKIVC SNWYSVWKTC VKRPLCPLRI IHQGDSPTVG DGNRKLMGFS YNSYCMASSG
101: NWLLMVDRCL KFYIYNLLTK ERIDLPSMES KIRGGQVSFK SKSNNYNFGY LVGPSRKDDI VPYDYEAVEW KKSLAVLWVD ETTGDYAVAW TFMRQYLFSY
201: IKGDYSWCNL NHNGKSLVLF DMACENNKLY LLTMDHHIKI FNFYGDFLTG EQNLYPFNFV EDPSEYVWKR KIVIRRSGEV LIVLSLKKKV QNEEKLLFYI
301: FKMNLESRKW ERVYCIGDEM LIFGRGVTAL ALEDLDDGIK SNSIYFVGED VWPDHQEHEH RVSNCGFFDI ATSKIEWPKK IYCFINQNQW FVGGVAY

Arabidopsis Description

Putative F-box protein At2g04810 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.