Factsheet for TraesCS3B01G507800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, plasma membrane

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G464200.1	Wheat	cytosol	85.75	85.1
TraesCS3D01G458800.1	Wheat	cytosol	28.24	59.04
TraesCS3B01G508400.1	Wheat	cytosol	40.97	44.97
TraesCS3B01G507400.1	Wheat	cytosol	40.71	39.7
Zm00001d021115_P001	Maize	cytosol	30.28	39.4
TraesCS1B01G077100.1	Wheat	cytosol	41.98	38.55
TraesCS3B01G507700.1	Wheat	endoplasmic reticulum, golgi	40.71	37.3
TraesCS2B01G363100.1	Wheat	cytosol, peroxisome, plastid	33.08	36.83
Zm00001d021117_P001	Maize	cytosol, plastid	30.79	36.23
Zm00001d021099_P001	Maize	cytosol, vacuole	30.79	36.23
TraesCS3B01G507200.1	Wheat	cytosol	16.79	35.87
Zm00001d021097_P001	Maize	cytosol	34.1	35.73
TraesCS4B01G058700.1	Wheat	plastid	39.95	35.44
Zm00001d021107_P001	Maize	cytosol	32.57	35.16
TraesCS1B01G127800.1	Wheat	plasma membrane	34.1	35.08
TraesCS3B01G572600.1	Wheat	peroxisome	27.74	33.44
TraesCS6B01G438000.1	Wheat	cytosol, plastid	34.35	33.09
TraesCS5B01G447400.1	Wheat	cytosol, plastid	35.11	30.6
Zm00001d021103_P001	Maize	cytosol	23.66	30.49
EES02090	Sorghum	cytosol	31.81	30.19
TraesCS1B01G110300.1	Wheat	cytosol	24.17	26.76
TraesCS3B01G560000.1	Wheat	cytosol	24.68	24.07
TraesCS3B01G559900.1	Wheat	cytosol	24.43	23.76
TraesCS6B01G450800.1	Wheat	mitochondrion	25.95	23.34
TraesCS3B01G560700.1	Wheat	cytosol	19.85	19.85
TraesCS3B01G553300.1	Wheat	cytosol	18.58	19.62
TraesCS3B01G585500.1	Wheat	cytosol, mitochondrion	14.76	19.27
TraesCS3B01G536000.1	Wheat	cytosol	17.56	18.06
TraesCS3B01G597100.1	Wheat	mitochondrion, plastid	13.74	17.94
TraesCS3B01G562600.1	Wheat	peroxisome	17.56	17.47
TraesCS3B01G560200.1	Wheat	cytosol	17.3	17.39
TraesCS6B01G350200.1	Wheat	cytosol	14.25	15.34

Protein Annotations

EnsemblPlants:TraesCS3B01G507800.1	EnsemblPlantsGene:TraesCS3B01G507800	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478	SUPFAM:SSF81383
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:751751416..751752597

Molecular Weight (calculated)

43662.1 Da

IEP (calculated)

5.911

GRAVY (calculated)

0.104

Length

393 amino acids

Sequence
(BLAST)

001: MAAAPGYEVP TPLAAPVLPS MAAAGWSSLP SDLVLCIADC LLDTNDVDCY VDLRAVCHNW RSATEDPRSD ASDPRFHPRF WIVLDDDGAF QSDGCRVLVN
101: TATSRFLRKQ LPLPRHYYVV TTTVNGFLVL DDRSPPHAAR LLNPLTGAVV IFNAPVPRDA SVAVFFSSGG TPHNLIVLCD STRKYYRAVP DSECFIAGDI
201: NHVFYNYMRK VVVGSVYSNG AGCVSVAQSN VIMEYLLDLS EKLQTDFVKF FSVDPLGHHN DVRCFLLHFG GEVFFITMAL ERVVAVLIVD PTEKQALTPV
301: KTVGRYAIFI SHQRCLVVDA AKFPSVEADC VYYTQDVGKF AFIWKHNIRD GKDERVYDDI NFVKEDKHFV SSGPLPFTII QLLSSYTINL SDS

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.