Factsheet for TraesCS6B01G450800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G389700.1	Wheat	mitochondrion	85.35	85.35
EER98141	Sorghum	cytosol, mitochondrion	43.71	42.26
Zm00001d019067_P001	Maize	cytosol	43.48	41.39
EER98142	Sorghum	mitochondrion	25.63	34.57
TraesCS3B01G559900.1	Wheat	cytosol	30.21	32.67
TraesCS3B01G560000.1	Wheat	cytosol	29.52	32.01
TraesCS4B01G058700.1	Wheat	plastid	27.46	27.09
TraesCS1B01G127800.1	Wheat	plasma membrane	23.57	26.96
TraesCS3B01G508400.1	Wheat	cytosol	21.28	25.98
TraesCS3B01G507800.1	Wheat	cytosol, plasma membrane, plastid	23.34	25.95
TraesCS1B01G110300.1	Wheat	cytosol	20.59	25.35
TraesCS3B01G507400.1	Wheat	cytosol	23.34	25.31
TraesCS3B01G572600.1	Wheat	peroxisome	18.76	25.15
TraesCS3B01G507200.1	Wheat	cytosol	10.53	25.0
TraesCS5B01G447400.1	Wheat	cytosol, plastid	24.71	23.95
TraesCS1B01G077100.1	Wheat	cytosol	22.43	22.9
TraesCS2B01G363100.1	Wheat	cytosol, peroxisome, plastid	18.08	22.38
TraesCS3B01G507700.1	Wheat	endoplasmic reticulum, golgi	21.74	22.14
TraesCS6B01G438000.1	Wheat	cytosol, plastid	19.45	20.83
TraesCS3B01G560700.1	Wheat	cytosol	16.93	18.83
TraesCS3B01G560200.1	Wheat	cytosol	16.48	18.41
TraesCS3B01G536000.1	Wheat	cytosol	15.1	17.28
TraesCS3B01G553300.1	Wheat	cytosol	14.42	16.94
TraesCS3B01G585500.1	Wheat	cytosol, mitochondrion	11.44	16.61
TraesCS3B01G597100.1	Wheat	mitochondrion, plastid	11.21	16.28
TraesCS6B01G350200.1	Wheat	cytosol	13.27	15.89
TraesCS3B01G562600.1	Wheat	peroxisome	13.96	15.44

Protein Annotations

EnsemblPlants:TraesCS6B01G450800.1	EnsemblPlantsGene:TraesCS6B01G450800	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF295	InterPro:F-box-like_dom_sf	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478	SEG:seg
SUPFAM:SSF81383	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6B:+:709559682..709561324

Molecular Weight (calculated)

49036.1 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.175

Length

437 amino acids

Sequence
(BLAST)

001: MTCTQHTQKR GRLTHAAAEA TMPDWTSLPY DNVCNIGDCL LSNNDIDDYM ALRAVCHGWR SATKDYPEKW DYADPHYFKP SKWALLDLCD DLITLVNIDT
101: GRFLRKSIPL LRGFFFVGAT CGGLILLGES TKPHQACVLN PFTGSIAHLK ASIPDVGVRA VAMTTKPLMV FVSTKNCDIL WADQNNKYFE QFWTNYPYKP
201: TCMVSLAENV YVTGLCGSIH SLTVVDDVVG EQRHKCSSLT ISMETIVPSI GDTSHQRLIE DGRYYLVESG GDLLLVAKPL YFTLDQPVVR RVDIKKKVLE
301: PVSSIGKHAI FVSHAKCLFV NADKFQGILG GCIYFIEPMV TRGNFEPSKV TIFNVADRRI MVEWDTLEGC FRPFTPAQVF TDYCRSIHYS ELYHMMASEW
401: GYSDDVFESD EDSSSELDDE SSSSELGDES SDDEPGD

Best Arabidopsis Sequence Match ( AT2G17690.1 )
(BLAST)

001: MGDWSKLPEE LLGLIALRLY SVIELIRFRS ICKSWRSSAS GVNKNHSLSS PLIYFKPLQI ILARAQANGQ ILSKYHGTVL SRATFFRVTL ASSPDQGWLI
101: KSDTDLKYRN FHLLNCLSRK ALGRSRKLIS LSEFIVSEIQ ESYAVVGRRT RETASEFKRV FLVRVQGGDH RVLVIGIDGK IRFWKGGIWN GIKKQVAQFS
201: DFVLDEGLTY AVDTKGIMWW ISSAYDIIRY GTKLHENITN GSCGEKRFVR CRGELYIVDR LIDENLLKRK ADSYDDNAIV HFRNADYTNA DLWEDGNGND
301: DFFAAQAHRF IHVLHDNLGN VSCKPFERDP PKTIGFKVYK NDEELLKWVE VKSLGDKAIV IATDACFSVS AHEFYGCLPN SIYFTDKKEE EVKVFKLDDG
401: SITTMSESEQ SCFQMFVPSF L

Arabidopsis Description

SDCF-box protein At2g17690 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBY8]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.