Factsheet for TraesCS6D01G389700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G450800.1	Wheat	mitochondrion	85.35	85.35
EER98141	Sorghum	cytosol, mitochondrion	43.02	41.59
Zm00001d019067_P001	Maize	cytosol	40.05	38.13
EER98142	Sorghum	mitochondrion	26.09	35.19
TraesCS3D01G504800.1	Wheat	cytosol	29.98	32.19
TraesCS3D01G504700.1	Wheat	cytosol	27.0	32.15
TraesCS3D01G069100.1	Wheat	cytosol	23.11	27.08
TraesCS4D01G058600.1	Wheat	cytosol	24.49	26.55
TraesCS3D01G458900.1	Wheat	cytosol	24.03	26.25
TraesCS1D01G104900.1	Wheat	extracellular, plasma membrane, plastid	22.43	25.72
TraesCS3D01G459700.1	Wheat	cytosol, plastid	23.34	25.25
TraesCS3D01G512600.1	Wheat	cytosol, nucleus, peroxisome	20.37	24.59
TraesCS1D01G365300.1	Wheat	cytosol	20.14	24.18
TraesCS3D01G464100.1	Wheat	cytosol, mitochondrion, peroxisome	21.74	23.81
TraesCS5D01G038100.1	Wheat	cytosol	23.11	23.11
TraesCS2D01G343100.1	Wheat	cytosol	21.28	22.96
TraesCS3D01G458400.1	Wheat	cytosol	20.82	22.92
TraesCS1D01G092000.1	Wheat	cytosol	18.54	22.82
TraesCS3D01G458000.1	Wheat	cytosol	21.51	22.71
TraesCS3D01G458300.1	Wheat	cytosol	21.28	22.63
TraesCS3D01G459500.1	Wheat	cytosol	22.43	21.63
TraesCS3D01G457900.1	Wheat	plastid	20.82	21.51
TraesCS3D01G458200.1	Wheat	plastid	20.37	21.39
TraesCS3D01G462200.1	Wheat	cytosol	21.28	20.9
TraesCS5D01G357400.1	Wheat	plastid	16.48	20.0
TraesCS3D01G458800.1	Wheat	cytosol	7.09	16.49
TraesCS7D01G325400.1	Wheat	cytosol, mitochondrion	13.04	15.66
TraesCS3D01G494300.1	Wheat	cytosol	16.48	15.25
TraesCS6D01G298900.1	Wheat	cytosol	12.59	15.15

Protein Annotations

EnsemblPlants:TraesCS6D01G389700.1	EnsemblPlantsGene:TraesCS6D01G389700	InterPro:DUF295	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:465064293..465065606

Molecular Weight (calculated)

48996.1 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.212

Length

437 amino acids

Sequence
(BLAST)

001: MTCTQHTQKR GRLTHAAAEA TMPDWTSLPY DNVCNIGECL LSNNDIDNYM ALRAVCHDWR SATKDYPEKG DYTDPHYFKP SKWALLDLCD DLITLVNIDT
101: GRFLHKSMPL LRGFFFVGAT CGGLILLGES TKPHQACVLN PFTGSIVHLK ASIPDVGVRA VAMTTKPLMV FVSTKNCDIL WADQNNKYFE QFWTNYPYKP
201: TCMVSFAENV YVTDLCGSIH SLTVADVVVG EQRHKCSALT ISMETIFPSI GDTSHQGLTE GGRYYLMKSG EDLLLVAKPL YFTLDQPVVR RVDIEKKVLE
301: PVSTIGKRAL FVSHAKGLSV NADKFQGILG GCIHFIEPML TRGNFEPSKV TIFHVADRRI MVEWDALEGC FRPFTLAQVF TDYCRPIHYS ELYHMMANEW
401: GYSDDGFESD EDSSSQLDDE SSSSELGDES SSNEPND

Best Arabidopsis Sequence Match ( AT2G17036.1 )
(BLAST)

001: MMDWATLPKD LLDLISKCLE SSFDLIQFRS VCSSWRSAAG PKRLLWAHNL PFFPSDDKPF LSNVILRVAH QSILLIKPNE PQCEADLFGW IVKVWDNIYV
101: SRKMTLLKPL SSSRNYFPQH LPRIFDMSKF TVRELCREVK LYHPDYYCVP GHTALELELG KTVVKYLNDD KFVLLTILEY GKLAVFRSWD REWTVINDYI
201: PSRCQDLIMF DGRFFAIDYN GRTVVVDYSS FKLTLAANPL IGGGDKKFLI ESCGEMFLVD IEFCLNEKPE FTGGFYSYFN ETTVSYKFKF FKLVEREKRW
301: VEVEDLGDKM FFLGDDSTFS ASTADIIPRC VGTGSFVFFY THEESLVVMD DRNLGVFDFR SGKTELVNKL PEYAKLFWPP PPWITTSHES VENYTGETSS
401: QSQS

Arabidopsis Description

F-box protein At2g17036 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.