Factsheet for TraesCS5D01G357400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plasma membrane 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G350400.1	Wheat	cytosol	35.56	35.46
TraesCS7D01G325400.1	Wheat	cytosol, mitochondrion	26.11	25.82
TraesCS3D01G494300.1	Wheat	cytosol	30.28	23.09
TraesCS6D01G298900.1	Wheat	cytosol	20.83	20.66
TraesCS1D01G092000.1	Wheat	cytosol	19.17	19.44
TraesCS3D01G458200.1	Wheat	plastid	21.67	18.75
TraesCS3D01G069100.1	Wheat	cytosol	18.89	18.23
TraesCS3D01G504700.1	Wheat	cytosol	18.33	17.98
TraesCS3D01G458000.1	Wheat	cytosol	20.56	17.87
TraesCS1D01G365300.1	Wheat	cytosol	18.06	17.86
TraesCS3D01G458400.1	Wheat	cytosol	19.44	17.63
TraesCS4D01G058600.1	Wheat	cytosol	19.44	17.37
TraesCS1D01G104900.1	Wheat	extracellular, plasma membrane, plastid	18.33	17.32
TraesCS3D01G459700.1	Wheat	cytosol, plastid	19.17	17.08
TraesCS3D01G458900.1	Wheat	cytosol	18.89	17.0
TraesCS2D01G343100.1	Wheat	cytosol	18.89	16.79
TraesCS3D01G504800.1	Wheat	cytosol	18.89	16.71
TraesCS3D01G457900.1	Wheat	plastid	19.44	16.55
TraesCS6D01G389700.1	Wheat	mitochondrion	20.0	16.48
TraesCS3D01G464100.1	Wheat	cytosol, mitochondrion, peroxisome	18.06	16.29
TraesCS3D01G512600.1	Wheat	cytosol, nucleus, peroxisome	16.11	16.02
TraesCS5D01G038100.1	Wheat	cytosol	18.89	15.56
TraesCS3D01G458300.1	Wheat	cytosol	17.22	15.09
TraesCS3D01G462200.1	Wheat	cytosol	16.39	13.26
TraesCS3D01G459500.1	Wheat	cytosol	16.11	12.8
TraesCS3D01G458800.1	Wheat	cytosol	4.17	7.98

Protein Annotations

EnsemblPlants:TraesCS5D01G357400.1

EnsemblPlantsGene:TraesCS5D01G357400

InterPro:DUF295

PANTHER:PTHR33165

PFAM:PF03478

MapMan:35.2

Description

No Description!

Coordinates

chr5D:-:438154305..438155387

Molecular Weight (calculated)

39832.2 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.007

Length

360 amino acids

Sequence
(BLAST)

001: MPAASVSWSS LPPDLVSCVG EILLSAGDID SYMTFRAACR SWRAATDDPC GLSRRFRPHR WVMLDDLSRH VDSRLFLNLD TGRFLRKNVP LLNDGAYTYV
101: GAADGLILLK VDTGYGCDIC ILNPFTGSTL RFPSGLASRR QCSRVAVTAD ATAPLVFLFL DCLGGVCYDP SNPLPRWFSA ERSPVNMLIN VLSFQGRAYI
201: ADAGGSVKVV GCPKGPHTNL EITTIIKHNS VTERSFLVDN VGELLLVGKL PSMPGHPRYS PFVRRMHVFR LDLERKALEP IKSIGNRAIF LGPGHCLSID
301: TNHLPAIEAN CIYYYNVKEK DIQMYLYHLE DGSRELLTSP PLHGPSSLAQ IILEYCRGRS

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.