Factsheet for TraesCS3D01G458000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G458200.1	Wheat	plastid	68.36	68.03
TraesCS3D01G457900.1	Wheat	plastid	55.8	54.61
TraesCS3D01G459700.1	Wheat	cytosol, plastid	46.86	48.02
TraesCS3D01G458400.1	Wheat	cytosol	45.17	47.1
TraesCS3D01G464100.1	Wheat	cytosol, mitochondrion, peroxisome	44.2	45.86
Zm00001d021115_P001	Maize	cytosol	32.85	45.03
TraesCS3D01G458300.1	Wheat	cytosol	43.96	44.28
TraesCS3D01G458900.1	Wheat	cytosol	42.03	43.5
TraesCS2D01G343100.1	Wheat	cytosol	40.58	41.48
TraesCS3D01G459500.1	Wheat	cytosol	45.17	41.28
Zm00001d021099_P001	Maize	cytosol, vacuole	32.13	39.82
TraesCS4D01G058600.1	Wheat	cytosol	38.65	39.7
Zm00001d021117_P001	Maize	cytosol, plastid	31.88	39.52
TraesCS3D01G069100.1	Wheat	cytosol	35.27	39.14
TraesCS3D01G462200.1	Wheat	cytosol	41.79	38.88
Zm00001d021107_P001	Maize	cytosol	34.06	38.74
Zm00001d021097_P001	Maize	cytosol	34.78	38.4
TraesCS3D01G458800.1	Wheat	cytosol	17.15	37.77
TraesCS1D01G365300.1	Wheat	cytosol	32.85	37.36
TraesCS5D01G038100.1	Wheat	cytosol	38.89	36.84
TraesCS3D01G512600.1	Wheat	cytosol, nucleus, peroxisome	31.88	36.46
TraesCS1D01G104900.1	Wheat	extracellular, plasma membrane, plastid	33.09	35.96
Zm00001d021103_P001	Maize	cytosol	24.88	33.77
TraesCS1D01G092000.1	Wheat	cytosol	27.05	31.55
EES02090	Sorghum	cytosol	28.26	28.26
TraesCS3D01G504700.1	Wheat	cytosol	24.15	27.25
TraesCS3D01G504800.1	Wheat	cytosol	24.4	24.82
TraesCS6D01G389700.1	Wheat	mitochondrion	22.71	21.51
TraesCS5D01G357400.1	Wheat	plastid	17.87	20.56
TraesCS3D01G494300.1	Wheat	cytosol	18.84	16.53
TraesCS7D01G325400.1	Wheat	cytosol, mitochondrion	14.01	15.93
TraesCS6D01G298900.1	Wheat	cytosol	12.8	14.6

Protein Annotations

EnsemblPlants:TraesCS3D01G458000.1	EnsemblPlantsGene:TraesCS3D01G458000	InterPro:DUF295	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:563446046..563447290

Molecular Weight (calculated)

46211.6 Da

IEP (calculated)

7.517

GRAVY (calculated)

0.062

Length

414 amino acids

Sequence
(BLAST)

001: MAAPATEAPV LPPAKRNKAD TSLLHTSAAL PAADWSALLP DLVRRVADSL LATNDLDCYM DFRAVCSGWR AATDDPRSDP SDPRFRPQRW VILDDGADPR
101: FLPYRLVFLN DGADLLLLNA ATGRFLRKRT PLRRRYSVVA TTPGGLFVLA DRNHSRAACV FNPLTGVLIR FAAPVPTEEV AVATVVFGRG SSPTLNLFCD
201: SSLNFYVAAP VSESFNKHNV STYYFLRKAV RGGWGLCYPW RYFVMCKIFD LIESLHVDPI KFFSQDLPVA GHTNDHGWCF LVELGGQVLV VIKLHRCVKV
301: FKMEVDSIVP VESIGSHAIF IGHHRCLAVD THKFPSVEAN CIYYVERLAS SAYICMYNLK DEEDEMISAG AVDFMKTDKL FVIAPHRPFT IIHLLSSYTI
401: NVRDSQLPLQ QDAN

Best Arabidopsis Sequence Match ( AT2G17030.1 )
(BLAST)

001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS

Arabidopsis Description

SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.