Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G363100.1 | Wheat | cytosol, peroxisome, plastid | 62.96 | 72.24 |
| TraesCS3D01G458400.1 | Wheat | cytosol | 55.8 | 56.93 |
| TraesCS3D01G458300.1 | Wheat | cytosol | 48.4 | 47.69 |
| TraesCS3D01G459700.1 | Wheat | cytosol, plastid | 46.42 | 46.53 |
| TraesCS3D01G464100.1 | Wheat | cytosol, mitochondrion, peroxisome | 42.22 | 42.86 |
| TraesCS3A01G464100.1 | Wheat | plastid | 43.46 | 42.82 |
| TraesCS3D01G458200.1 | Wheat | plastid | 42.72 | 41.59 |
| TraesCS3D01G458900.1 | Wheat | cytosol | 40.99 | 41.5 |
| TraesCS3D01G458000.1 | Wheat | cytosol | 41.48 | 40.58 |
| TraesCS3D01G457900.1 | Wheat | plastid | 40.49 | 38.77 |
| Zm00001d021115_P001 | Maize | cytosol | 28.89 | 38.74 |
| TraesCS3D01G459500.1 | Wheat | cytosol | 42.47 | 37.97 |
| TraesCS1D01G365300.1 | Wheat | cytosol | 32.1 | 35.71 |
| Zm00001d021117_P001 | Maize | cytosol, plastid | 29.14 | 35.33 |
| TraesCS3D01G462200.1 | Wheat | cytosol | 38.77 | 35.28 |
| Zm00001d021099_P001 | Maize | cytosol, vacuole | 28.89 | 35.03 |
| Zm00001d021107_P001 | Maize | cytosol | 30.86 | 34.34 |
| TraesCS3D01G069100.1 | Wheat | cytosol | 30.86 | 33.51 |
| TraesCS1D01G104900.1 | Wheat | extracellular, plasma membrane, plastid | 31.11 | 33.07 |
| Zm00001d021097_P001 | Maize | cytosol | 30.62 | 33.07 |
| TraesCS3D01G458800.1 | Wheat | cytosol | 15.31 | 32.98 |
| TraesCS5D01G038100.1 | Wheat | cytosol | 34.32 | 31.81 |
| TraesCS4D01G058600.1 | Wheat | cytosol | 31.36 | 31.51 |
| Zm00001d021103_P001 | Maize | cytosol | 22.96 | 30.49 |
| TraesCS3D01G512600.1 | Wheat | cytosol, nucleus, peroxisome | 27.16 | 30.39 |
| TraesCS1D01G092000.1 | Wheat | cytosol | 24.94 | 28.45 |
| EES02090 | Sorghum | cytosol | 26.91 | 26.33 |
| TraesCS3D01G504700.1 | Wheat | cytosol | 20.74 | 22.89 |
| TraesCS6D01G389700.1 | Wheat | mitochondrion | 22.96 | 21.28 |
| TraesCS3D01G504800.1 | Wheat | cytosol | 19.75 | 19.66 |
| TraesCS5D01G357400.1 | Wheat | plastid | 16.79 | 18.89 |
| TraesCS6D01G298900.1 | Wheat | cytosol | 15.56 | 17.36 |
| TraesCS7D01G325400.1 | Wheat | cytosol, mitochondrion | 15.06 | 16.76 |
| TraesCS3D01G494300.1 | Wheat | cytosol | 18.27 | 15.68 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G343100.1 | EnsemblPlantsGene:TraesCS2D01G343100 | Gene3D:1.20.1280.50 | InterPro:DUF295 | PANTHER:PTHR33165 | PANTHER:PTHR33165:SF11 |
| PFAM:PF03478 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:439463239..439464456
Molecular Weight (calculated)
44538.6 Da
IEP (calculated)
6.889
GRAVY (calculated)
-0.006
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQELVRTAM AAAPGDVPPP LATPALLPQA KRVKEDPSFP QASPVVPAMT AEDWSKWSTL PPDLVRCIGD SLLSTNDLDC YIHFRAVCPG WRAAADDPMS
101: DTSDPRFHPR RWIVLNEDFQ SEGKLLLLNT DNGRFVHRKL PLLSDHYVVA TTRNGYLVLA DKSPPHSASV LNPLTGVVIR FMAPVPPEVG HAAVSLASSA
201: LGLTLFGDSS HKIYSAYPDN KSSVVHEAQQ AAYVFFRNAV VGGVYSDTIG HAVIVRLCRS LMPPDANHLC FPVALGREML LVGTAERSFF IFKTDIELSK
301: LEDVDTINNY AIFIGHQRCL AVYADKFIGI EANCIYYTEN LGSSARICKC GIKDRKVEKI SETADFIKKD KKFVLVADRP STIIDLLASY TINIPDSRLA
401: LQQIP
101: DTSDPRFHPR RWIVLNEDFQ SEGKLLLLNT DNGRFVHRKL PLLSDHYVVA TTRNGYLVLA DKSPPHSASV LNPLTGVVIR FMAPVPPEVG HAAVSLASSA
201: LGLTLFGDSS HKIYSAYPDN KSSVVHEAQQ AAYVFFRNAV VGGVYSDTIG HAVIVRLCRS LMPPDANHLC FPVALGREML LVGTAERSFF IFKTDIELSK
301: LEDVDTINNY AIFIGHQRCL AVYADKFIGI EANCIYYTEN LGSSARICKC GIKDRKVEKI SETADFIKKD KKFVLVADRP STIIDLLASY TINIPDSRLA
401: LQQIP
001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
Arabidopsis Description
SKIP23F-box protein SKIP23 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBZ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.