Factsheet for TraesCS4D01G058600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G058700.1	Wheat	plastid	74.94	68.17
Zm00001d021115_P001	Maize	cytosol	33.99	45.36
Zm00001d021097_P001	Maize	cytosol	40.69	43.73
Zm00001d021117_P001	Maize	cytosol, plastid	35.98	43.41
TraesCS3D01G069100.1	Wheat	cytosol	39.45	42.63
Zm00001d021099_P001	Maize	cytosol, vacuole	35.24	42.52
TraesCS1D01G365300.1	Wheat	cytosol	36.97	40.93
TraesCS3D01G458900.1	Wheat	cytosol	40.2	40.5
Zm00001d021107_P001	Maize	cytosol	35.98	39.84
TraesCS5D01G038100.1	Wheat	cytosol	42.93	39.59
TraesCS3D01G458000.1	Wheat	cytosol	39.7	38.65
TraesCS3D01G512600.1	Wheat	cytosol, nucleus, peroxisome	34.49	38.4
TraesCS3D01G459700.1	Wheat	cytosol, plastid	38.21	38.12
TraesCS3D01G458200.1	Wheat	plastid	38.96	37.74
TraesCS3D01G457900.1	Wheat	plastid	38.71	36.88
TraesCS1D01G104900.1	Wheat	extracellular, plasma membrane, plastid	34.74	36.75
TraesCS3D01G464100.1	Wheat	cytosol, mitochondrion, peroxisome	36.23	36.59
Zm00001d021103_P001	Maize	cytosol	27.54	36.39
TraesCS3D01G458400.1	Wheat	cytosol	33.75	34.26
TraesCS3D01G458300.1	Wheat	cytosol	33.0	32.36
TraesCS3D01G459500.1	Wheat	cytosol	36.23	32.23
TraesCS1D01G092000.1	Wheat	cytosol	27.79	31.55
TraesCS2D01G343100.1	Wheat	cytosol	31.51	31.36
TraesCS3D01G462200.1	Wheat	cytosol	33.5	30.34
TraesCS3D01G458800.1	Wheat	cytosol	13.9	29.79
EES02090	Sorghum	cytosol	30.52	29.71
TraesCS3D01G504700.1	Wheat	cytosol	24.07	26.43
TraesCS3D01G504800.1	Wheat	cytosol	24.81	24.57
TraesCS6D01G389700.1	Wheat	mitochondrion	26.55	24.49
TraesCS5D01G357400.1	Wheat	plastid	17.37	19.44
TraesCS7D01G325400.1	Wheat	cytosol, mitochondrion	15.63	17.31
TraesCS3D01G494300.1	Wheat	cytosol	20.1	17.16
TraesCS6D01G298900.1	Wheat	cytosol	11.17	12.4

Protein Annotations

EnsemblPlants:TraesCS4D01G058600.1	EnsemblPlantsGene:TraesCS4D01G058600	InterPro:DUF295	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:34668993..34670867

Molecular Weight (calculated)

45327.4 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.187

Length

403 amino acids

Sequence
(BLAST)

001: MAAADWSSLP CDLVRRIADC FLAANDVDYY MDLRAVCGSW RSATDDPKDS PDDPRFRPRQ WVVLDDDVFR REHTRLLVNT HTGRSPRKEL PLLGGHRYRH
101: VATTPGGFFV LADYDDYDAA RVLNPFTGHM IHFRATVPSD TVDVAAVIGS APTLVLLCDS DRKRYVAGSD SRSFAVYQEE DAYPLIRLAV AGGMYADGEQ
201: RPLPPLPAAV AGEVFHLMRV FSVEPSEMFW SDVVEHVVDD APAPEIEHAN NNRCYLVFRM DDSNRGVLEP VKSIGRHAIF VGCCRCLAVD ADKFPSVEAN
301: CIYHLVGMNP YGDFYFHDVY KFDLEDGTEE MVAEAISWSD PITRRDADPP FTAVQLLSSY TINVRGSELV IPETCRVDID QLVEEFFSTE DKEFFAMFPL
401: QLG

Best Arabidopsis Sequence Match ( AT1G65770.1 )
(BLAST)

001: MADWSTLPVD LLNMIAGRLF SNIELKRFRS ICRSWRSSVP GAGKKNPFRT RPLILLNPNP NKPLTDHRRR GEFLSRSAFF RVTLSSSPSQ GWLIKSDVDV
101: SSGKLHLLDP LSRLPMEHSR KRVDLSEFTI TEIREAYQVH DWRTRKETRP IFKRVALVKD KEGDNQVLGI RSTGKMMYWD IKTWKAKEEG YEFSDIIVHK
201: GQTYALDSIG IVYWIRSDLK FIRFGPLVGD WTGDRRLVEC CGEFYIVERL VGESTWKRKA DDTGYEYAKT VGFKVYKFDD EQGKMMEVKS LGDKAFVIAT
301: DTCFSVLAHE FYGCLENAIY FTDDTMIKVF KLDNGNGSSI ETTIYPYAQS CFQMFVPSFL

Arabidopsis Description

AMR1Putative F-box protein At1g65770 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.