Factsheet for TraesCS3A01G030200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G441700.1	Wheat	cytosol	80.0	69.08
Os05t0153132-00	Rice	cytosol	64.19	52.67
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	49.77	28.61
TraesCS3A01G157300.2	Wheat	nucleus	45.58	26.7
TraesCS3A01G156300.1	Wheat	nucleus, plastid	45.58	21.59
TraesCS1A01G129500.2	Wheat	nucleus	49.3	21.5
TraesCS3B01G029100.1	Wheat	cytosol, nucleus, plasma membrane	97.21	21.05
TraesCS3B01G029000.1	Wheat	cytosol, nucleus, plasma membrane	96.28	20.91
TraesCS3A01G269200.1	Wheat	nucleus	48.37	19.62
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	50.7	19.43
TraesCS3A01G030400.1	Wheat	plasma membrane	86.51	18.66
TraesCS3A01G031600.1	Wheat	cytosol	83.72	18.05
TraesCS2A01G403400.1	Wheat	cytosol	73.02	15.84
TraesCS2A01G586300.1	Wheat	nucleus	71.63	15.83
OQU79703	Sorghum	cytosol	61.86	15.41
OQU84284	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	53.95	13.68
TraesCS1A01G388400.1	Wheat	cytosol	51.16	13.05
TraesCS3A01G047700.3	Wheat	nucleus	58.14	11.23
KRH36075	Soybean	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS3A01G030200.1	EnsemblPlantsGene:TraesCS3A01G030200	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44422	PFAM:PF00179	PFscan:PS50127	SEG:seg	SMART:SM00212
SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3A:+:15838621..15839268

Molecular Weight (calculated)

24199.0 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.213

Length

215 amino acids

Sequence
(BLAST)

001: MDLLRVVMMG ASGTPYHDGL FFFDLQLPPS YPDAPPQVYY HSFGLRLNPN LYESGTVCLS LLNTFGGEGT EVWSSTESSL LQVVVSIQGL VFNDKPYYNE
101: TGYETMVDKP EGRRNALPYS ENAYLLTLRT MLHLLRRPPR GFEEFVKEHF RHRGRFVLGA CNAWLQGNIV DNAHATEVSR KQPCSAGLRL ALTKVVPSLV
201: AAFTEIRAKG CEEYQ

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.