CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G030200.1	Wheat	endoplasmic reticulum	13.68	53.95
TraesCS7D01G206600.1	Wheat	cytosol	14.74	53.65
TraesCS7B01G110500.1	Wheat	cytosol, plastid, vacuole	14.39	52.36
TraesCS3B01G029300.1	Wheat	peroxisome	12.85	50.7
TraesCS2A01G441700.1	Wheat	cytosol	14.15	48.19
TraesCS4D01G289700.1	Wheat	cytosol	12.85	47.6
Os05t0153132-00	Rice	cytosol	14.39	46.56
OQU79703	Sorghum	cytosol	37.15	36.5
TraesCS2A01G403400.1	Wheat	cytosol	39.27	33.6
TraesCS2D01G400600.1	Wheat	nucleus	39.5	33.5
TraesCS5B01G359000.1	Wheat	cytosol	35.14	33.37
TraesCS2B01G421500.1	Wheat	golgi, mitochondrion, plasma membrane	38.21	33.26
TraesCS2B01G596800.1	Wheat	cytosol	35.61	32.37
TraesCS2D01G600300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	37.03	32.27
TraesCS2A01G586300.1	Wheat	nucleus	36.79	32.07
TraesCS3B01G029100.1	Wheat	cytosol, nucleus, plasma membrane	36.91	31.52
TraesCS3B01G029000.1	Wheat	cytosol, nucleus, plasma membrane	36.79	31.52
TraesCS2D01G051900.1	Wheat	cytosol	36.44	31.5
TraesCSU01G013600.1	Wheat	cytosol	33.49	30.87
TraesCS3D01G015300.1	Wheat	plasma membrane	36.56	30.82
TraesCS3A01G030400.1	Wheat	plasma membrane	36.2	30.79
TraesCS3A01G031600.1	Wheat	cytosol	35.97	30.59
TraesCS3D01G015200.1	Wheat	cytosol	35.97	30.5
TraesCS2B01G461900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	36.91	30.21
KXG31477	Sorghum	mitochondrion, plastid	12.26	28.26
EES19929	Sorghum	nucleus	16.04	26.82
EES02568	Sorghum	nucleus	33.14	25.41
EES19930	Sorghum	cytosol	25.59	24.91
KXG31481	Sorghum	nucleus	12.85	23.75
EES17914	Sorghum	plastid	12.85	23.7
KXG33109	Sorghum	nucleus	14.03	22.28
KRH36075	Soybean	nucleus	13.09	21.02

Protein Annotations

EnsemblPlants:OQU84284	EnsemblPlantsGene:SORBI_3004G026900	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44422	PANTHER:PTHR44422:SF3	PFAM:PF00179	PFscan:PS50127	ProteinID:OQU84284
ProteinID:OQU84284.1	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI000B8BB19E	UniProt:A0A1Z5RKL8
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:2150777..2154481

Molecular Weight (calculated)

90935.0 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.327

Length

848 amino acids

Sequence
(BLAST)

001: MSGGGGAAAR KVIAWSDLVT LKGKGQRGVL VRRMPGDKFG TSAPYFRPGN IVASESDPAG QIGVVTGASV ALVLVRFDAD GRRQQQQGPP GGDVVVSRPS
101: EELRRVTGLV LGDYVVSGPW LGRVVEVSLD VDVAFDDGAL CSIAAGAERK LVGEGAQASE HDLRKNGRQT NSVLYPGQRV VATSPSVFRR ASRWSRGYWK
201: PSRVRGTVAG VLVHWVASMH LGTNKALIQA SAPPAWQPSP QKLALFPYPA SEASVWYVGD RCFFRAPPDD PCHDHHHAAA HAVDDDQESS SPYARANGRP
301: KTTSHVKRRP TTAAAKRKQQ AELLLERPMS VAGTRTTVDV LWQDGTRQCG VPSPSLLLFN PGRNNYDFFP GQDVISRPIA GEQAAARSGV VRSLNYGDKT
401: VSVSWFPSPP AVEGETTVVS AYGVARDSSA NFFYGDVVVR LRRHPPQVLP HEIAVVKPQK MTEMLKELGD WLYDDGDMDG TKEVGTTAAA AAAAAAQEPV
501: AAAVAITGGE TADSGNNAEG HDEDSSDGES DSEDKPTVTT RTTTDQVRSV VRALIRIAGD VFALGGRRDS AGSKPPAAAA AMESVVEAAT PLSRGYAAST
601: SSTSTSSEVK AGDDFLRFDV VKCPLDHHFI DSMKQGIPVG RNDGGRQRHS IPRRLFFFDL HLPPSYPAEP PLVNYRSFGL HVNPNLYPSS TVCLSLVNTF
701: GGERAEELWS PEASSILQVV VSIQGLVLAA QPYYNEPAHG AHAGTPQGRN TYLLNLQTML HLLRRPPAGF EAFVRDHFRS RGQHVLRACE AYQGGCLVGT
801: LDEEGRPSPT EGSRRRPCSA GFRLALLNVQ PRLVEAFATI DAQGCKPS

Best Arabidopsis Sequence Match ( AT2G16920.1 )
(BLAST)

0001: MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN
0101: GDGEKKADGN YKCGALEGDQ IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI HKDISTKNLK RVRDFAVGDY
0201: VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI PKNNLEEDAN FPYYPGQRVK ASSSSVFKNS RWLSGLWKPN RLEGTVTKVT AGSIFVYWIA
0301: SAGFGPDSSV SPPEEQNPSN LTLLSCFTHA NWQVGDWCLL PSLNQSATIP LHKHVSKLRL YDSQADRQQK IGRDLEDVQD EVSGKVEPAG ITAEALPKVT
0401: SDDPPQRNPS VSKEPVHEPW PLHRKKIRKL VIRKDKKVKK KEESFEQALL VVNSRTRVDV SWQDGTIECR REAITLIPIE TPGDHEFVSE QYVVEKTSDD
0501: GDNTTEPRRA GVVKNVNAKD RTASVRWLNP LRRAEEPREF EKEEIVSVYE LEGHPDYDYC YGDVVVRLSP IAVALPASSP GNSFEEATQQ DNGYQDSESH
0601: QEAKILVDKE ENEPSTDLSK LSWVGNITGL KDGDIEVTWA DGTISTVGPH AVYVVGRDDD DESVAGESET SDAASWETLN DDDRGAPEIP EEDLGRSSSI
0701: EGNSDADIYA ENDSGRNGAL ALPLAAIEFV TRLASGIFSR ARKSVDSSSS DYTVENVYKQ AESTNPSDET DSLDDPSPSK VNVTDNCESK GTQANAKNIL
0801: SGETSTFLED EDKPVPSEGD SCSFRRFDIS QDPLDHHFLG VDGQKTKERQ WFKKVDQDWK ILQNNLPDGI FVRAYEDRMD LLRAVIVGAF GTPYQDGLFF
0901: FDFHLPSDYP SVPPSAYYHS GGWRLNPNLY EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQVGTAEG EKNSLGYNEN
1001: TFLLNCKTMM YLMRKPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS LTKDASVIDE RSSANSTSVG FKLMLAKIAP KLFSALSEVG ADCNEFQHLQ
1101: QQ

Arabidopsis Description

UBC23Probable ubiquitin-conjugating enzyme E2 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.