CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	84.78	83.65
HORVU3Hr1G109730.1	Barley	cytosol	35.33	80.75
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	42.93	78.22
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	42.66	77.72
HORVU1Hr1G090980.2	Barley	cytosol	39.67	73.0
Zm00001d049101_P001	Maize	cytosol	30.71	72.44
Zm00001d047959_P001	Maize	cytosol	43.21	71.3
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	72.28	71.12
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	72.55	70.82
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	71.74	69.84
TraesCS3B01G183800.2	Wheat	nucleus	68.48	68.48
TraesCS3D01G164900.3	Wheat	nucleus	68.21	68.21
HORVU3Hr1G031950.4	Barley	mitochondrion	67.66	67.85
TraesCS3A01G157300.2	Wheat	nucleus	67.39	67.57
HORVU2Hr1G062530.3	Barley	cytosol	23.1	65.38
HORVU5Hr1G000190.3	Barley	cytosol	22.28	63.08
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	66.3	61.31
Os01t0233900-01	Rice	mitochondrion	71.2	56.34
CDY30673	Canola	nucleus	26.09	53.04
Bra036393.1-P	Field mustard	cytosol, extracellular	11.96	51.76
CDY51802	Canola	cytosol	27.45	49.27
AT1G53023.1	Thale cress	cytosol	38.59	44.94
KRH26136	Soybean	cytosol	34.24	41.45
CDY25883	Canola	cytosol	31.52	40.99
Bra041020.1-P	Field mustard	plastid	36.14	40.43
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	35.6	40.31
CDY25884	Canola	plastid	35.33	39.27
KRH26135	Soybean	cytosol	38.59	36.5
KXG31481	Sorghum	nucleus	45.38	36.38
GSMUA_Achr10P...	Banana	nucleus	46.74	36.13
EES17914	Sorghum	plastid	43.75	35.0
PGSC0003DMT400047166	Potato	nucleus	42.66	33.98
Solyc07g053960.2.1	Tomato	nucleus	42.66	33.91
KXG33109	Sorghum	nucleus	48.91	33.71
KRH58633	Soybean	cytosol, nucleus	40.22	33.04
EES19929	Sorghum	nucleus	45.11	32.74
CDX71178	Canola	cytosol	38.32	32.71
CDY55875	Canola	nucleus	36.96	31.85
KRH42541	Soybean	nucleus	40.76	31.65
Bra030965.1-P	Field mustard	nucleus	40.22	31.49
CDY02528	Canola	cytosol	40.49	31.04
CDY47562	Canola	cytosol	40.49	30.91
VIT_12s0028g03630.t01	Wine grape	nucleus	42.12	30.33
Bra040814.1-P	Field mustard	cytosol	38.32	30.32
CDY25886	Canola	cytosol	38.32	30.32
CDX82439	Canola	cytosol	37.5	30.07
CDY24125	Canola	cytosol	39.13	29.63
CDX75824	Canola	cytosol	37.5	29.55
Bra019007.1-P	Field mustard	cytosol	39.13	28.97
CDY26018	Canola	cytosol	39.13	28.35
Bra027252.1-P	Field mustard	cytosol	40.22	26.91
Bra001591.1-P	Field mustard	nucleus	39.4	26.9
CDX98552	Canola	cytosol	39.67	26.84
CDX97660	Canola	cytosol	40.22	26.81
AT1G53025.2	Thale cress	nucleus	39.4	26.03
AT3G15355.1	Thale cress	nucleus	41.3	24.96
Bra021105.1-P	Field mustard	nucleus	39.67	24.46
CDY20117	Canola	nucleus	39.67	24.41
KRH27240	Soybean	cytosol	43.21	22.59
Solyc10g007000.2.1	Tomato	cytosol	40.76	22.49
CDY21838	Canola	cytosol	39.4	22.34
KRH22096	Soybean	cytosol	43.75	22.27
VIT_19s0014g02760.t01	Wine grape	nucleus	43.48	21.33
PGSC0003DMT400039746	Potato	nucleus	41.58	21.1
PGSC0003DMT400064440	Potato	nucleus	41.58	21.02
Solyc12g013820.1.1	Tomato	nucleus	41.03	20.35
EES19930	Sorghum	cytosol	41.3	17.45
KRH55293	Soybean	cytosol, peroxisome, plastid	39.67	16.8
OQU79703	Sorghum	cytosol	35.87	15.3
EES02568	Sorghum	nucleus	39.95	13.29
OQU84284	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	28.26	12.26

Protein Annotations

EnsemblPlants:KXG31477	EnsemblPlantsGene:SORBI_3003G005600	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF1	PFAM:PF00179	PFscan:PS50127	ProteinID:KXG31475.1
ProteinID:KXG31476.1	ProteinID:KXG31477	ProteinID:KXG31477.1	SEG:seg	SMART:SM00212	SUPFAM:SSF54495
UniParc:UPI0001C80A9F	UniProt:A0A1B6Q0M5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:488052..494007

Molecular Weight (calculated)

41429.3 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.433

Length

368 amino acids

Sequence
(BLAST)

001: MALKKLLQLF CVGKKDSKKK GKSIDPLWRA SASLSSVSVT ANKTHLDPCS SGTGTVCVQN HEPECSSMVS SWARTEHGTE STDHMSFKQF DVVQDFSDHH
101: YAKTSAGKVT KDWVKAIQSE WSLLQKNLPE SIYVRVYEDR TDLLRAAIVG PAGTPYHDGL FFFDVRFPSE YPKCPPKVYY HSGGLRLNPN LYESGKVCLS
201: LLNTWWGNGC EKWGKSNSTM LQVLVSIQGL VLNDKPYFNE PGNKNSAQTT AGERYSLAYN QTTFVRSCKT MLYSLRKPPK HFETLVMCHF LKHERAILDA
301: CSAYMSGTIV GSSVGSDLKY ARDKCFADFH KSLTLYTEHL RTEFAANRRR MLELEREVSP AQEIVPSS

Best Arabidopsis Sequence Match ( AT3G15355.1 )
(BLAST)

001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS

Arabidopsis Description

UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.