Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51802 | Canola | cytosol | 28.01 | 76.1 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 11.31 | 74.12 |
| CDY47562 | Canola | cytosol | 63.02 | 72.82 |
| CDY02528 | Canola | cytosol | 62.48 | 72.5 |
| CDY55875 | Canola | nucleus | 55.3 | 72.13 |
| CDY30673 | Canola | nucleus | 23.34 | 71.82 |
| Bra030965.1-P | Field mustard | nucleus | 60.14 | 71.28 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 41.47 | 71.08 |
| CDX71178 | Canola | cytosol | 54.94 | 71.0 |
| CDY25883 | Canola | cytosol | 35.91 | 70.67 |
| Bra019007.1-P | Field mustard | cytosol | 62.84 | 70.42 |
| Bra041020.1-P | Field mustard | plastid | 41.47 | 70.21 |
| CDY26018 | Canola | cytosol | 63.2 | 69.29 |
| AT1G53023.1 | Thale cress | cytosol | 39.14 | 68.99 |
| CDY24125 | Canola | cytosol | 60.14 | 68.93 |
| CDY25884 | Canola | plastid | 40.22 | 67.67 |
| CDY25886 | Canola | cytosol | 54.58 | 65.38 |
| Bra040814.1-P | Field mustard | cytosol | 54.58 | 65.38 |
| HORVU3Hr1G109730.1 | Barley | cytosol | 16.34 | 56.52 |
| HORVU1Hr1G090980.2 | Barley | cytosol | 18.85 | 52.5 |
| Zm00001d009007_P001 | Maize | cytosol | 21.18 | 48.16 |
| AT3G15355.1 | Thale cress | nucleus | 52.6 | 48.11 |
| GSMUA_Achr7P25120_001 | Banana | cytosol | 25.49 | 47.49 |
| KRH26136 | Soybean | cytosol | 24.6 | 45.07 |
| TraesCS5D01G272300.1 | Wheat | cytosol, nucleus, plastid | 27.47 | 44.74 |
| Os01t0677500-00 | Rice | cytosol | 26.75 | 43.19 |
| Zm00001d051483_P001 | Maize | mitochondrion, nucleus, peroxisome | 15.26 | 42.08 |
| Zm00001d015028_P001 | Maize | cytosol, mitochondrion, nucleus | 15.08 | 41.58 |
| HORVU2Hr1G062530.3 | Barley | cytosol | 9.52 | 40.77 |
| HORVU5Hr1G000190.3 | Barley | cytosol | 9.34 | 40.0 |
| KRH26135 | Soybean | cytosol | 27.83 | 39.85 |
| KXG31477 | Sorghum | mitochondrion, plastid | 26.03 | 39.4 |
| TraesCS3A01G157200.1 | Wheat | mitochondrion, nucleus, plastid | 26.21 | 39.04 |
| TraesCS3B01G183600.1 | Wheat | mitochondrion, nucleus | 26.21 | 38.73 |
| Os09t0294300-01 | Rice | nucleus | 29.98 | 38.57 |
| TraesCS3D01G164800.2 | Wheat | mitochondrion, nucleus, plastid | 26.03 | 38.36 |
| Zm00001d009513_P003 | Maize | cytosol | 27.29 | 38.29 |
| HORVU3Hr1G031950.4 | Barley | mitochondrion | 24.96 | 37.87 |
| TraesCS3A01G157300.2 | Wheat | nucleus | 24.96 | 37.87 |
| TraesCS3B01G183800.2 | Wheat | nucleus | 24.96 | 37.77 |
| GSMUA_Achr6P22670_001 | Banana | cytosol | 30.88 | 37.55 |
| Zm00001d039280_P005 | Maize | mitochondrion, nucleus, plastid | 25.13 | 37.53 |
| TraesCS3D01G164900.3 | Wheat | nucleus | 24.78 | 37.5 |
| TraesCS3D01G164200.1 | Wheat | nucleus, plastid | 30.34 | 37.47 |
| HORVU3Hr1G031890.10 | Barley | cytosol, nucleus | 26.39 | 36.93 |
| Zm00001d047959_P001 | Maize | cytosol | 14.72 | 36.77 |
| TraesCS3B01G183000.1 | Wheat | nucleus, plastid | 29.8 | 36.73 |
| TraesCS3A01G156300.1 | Wheat | nucleus, plastid | 29.8 | 36.56 |
| TraesCS5D01G272400.1 | Wheat | nucleus | 29.62 | 36.42 |
| Zm00001d039285_P001 | Maize | cytosol, plastid | 29.26 | 36.22 |
| Os05t0232500-01 | Rice | nucleus, plastid | 29.98 | 35.76 |
| EES17914 | Sorghum | plastid | 29.26 | 35.43 |
| Os05t0557600-01 | Rice | cytosol | 32.32 | 35.36 |
| TraesCS5B01G264000.1 | Wheat | nucleus | 28.73 | 35.32 |
| HORVU1Hr1G029800.11 | Barley | plastid | 30.16 | 35.22 |
| KXG31481 | Sorghum | nucleus | 28.9 | 35.08 |
| Os01t0232500-01 | Rice | nucleus | 30.52 | 35.05 |
| GSMUA_Achr9P00210_001 | Banana | plastid | 33.75 | 35.01 |
| TraesCS1A01G129500.2 | Wheat | nucleus | 30.88 | 34.89 |
| HORVU3Hr1G031730.4 | Barley | nucleus, plastid | 29.98 | 34.79 |
| EES19929 | Sorghum | nucleus | 31.42 | 34.52 |
| Zm00001d049101_P001 | Maize | cytosol | 9.52 | 33.97 |
| GSMUA_Achr10P... | Banana | nucleus | 28.9 | 33.82 |
| TraesCS3D01G269000.1 | Wheat | nucleus | 31.96 | 33.58 |
| TraesCS3A01G269200.1 | Wheat | nucleus | 31.78 | 33.4 |
| KXG33109 | Sorghum | nucleus | 31.96 | 33.33 |
| TraesCS3B01G303300.1 | Wheat | nucleus | 31.6 | 33.21 |
| TraesCS1D01G125200.2 | Wheat | plastid | 30.88 | 33.01 |
| TraesCS1B01G146400.2 | Wheat | plastid | 30.7 | 32.95 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 32.5 | 32.26 |
| TraesCS1D01G396000.2 | Wheat | cytosol, mitochondrion, nucleus | 32.32 | 32.2 |
| Os01t0233900-01 | Rice | mitochondrion | 26.75 | 32.04 |
| TraesCS1A01G388000.1 | Wheat | cytosol, mitochondrion, nucleus | 31.96 | 31.73 |
| KRH27240 | Soybean | cytosol | 39.86 | 31.53 |
| HORVU1Hr1G085630.1 | Barley | cytosol, nucleus | 31.96 | 30.74 |
| Solyc10g007000.2.1 | Tomato | cytosol | 36.8 | 30.73 |
| KRH22096 | Soybean | cytosol | 39.68 | 30.57 |
| HORVU3Hr1G062370.3 | Barley | golgi | 31.96 | 30.22 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 40.57 | 30.13 |
| PGSC0003DMT400064440 | Potato | nucleus | 36.98 | 28.3 |
| PGSC0003DMT400039746 | Potato | nucleus | 34.65 | 26.62 |
| Solyc12g013820.1.1 | Tomato | nucleus | 35.01 | 26.28 |
| Os01t0229900-01 | Rice | mitochondrion | 11.85 | 24.26 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 34.65 | 22.21 |
| AT2G33770.1 | Thale cress | nucleus | 28.37 | 17.42 |
| AT2G16920.1 | Thale cress | nucleus | 28.37 | 14.34 |
| Os03t0679300-01 | Rice | mitochondrion | 3.23 | 10.84 |
Protein Annotations
| EntrezGene:10723113 | Gene3D:3.10.110.10 | MapMan:35.1 | UniProt:A0A178W4Y0 | UniProt:A0A1P8AUV7 | ProteinID:AAF87864.1 |
| ProteinID:AEE32878.1 | EMBL:AK117792 | EMBL:AK176042 | ProteinID:ANM60420.1 | ArrayExpress:AT1G53025 | EnsemblPlantsGene:AT1G53025 |
| RefSeq:AT1G53025 | TAIR:AT1G53025 | RefSeq:AT1G53025-TAIR-G | EnsemblPlants:AT1G53025.2 | EMBL:BT005918 | EMBL:DQ027039 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 |
| GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_001185207.1 | RefSeq:NP_001322707.1 | ProteinID:OAP12740.1 |
| ProteinID:OAP12741.1 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF5 | SMART:SM00212 |
| SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0007DF23B7 | SEG:seg | : |
Description
Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
Coordinates
chr1:-:19756445..19759700
Molecular Weight (calculated)
62106.2 Da
IEP (calculated)
7.949
GRAVY (calculated)
-0.503
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSSIKEFLAN IGRCVFQ
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSSIKEFLAN IGRCVFQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.