Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82439 | Canola | cytosol | 51.07 | 67.76 |
| CDX98552 | Canola | cytosol | 58.29 | 65.26 |
| Bra027252.1-P | Field mustard | cytosol | 57.31 | 63.45 |
| CDX97660 | Canola | cytosol | 57.31 | 63.22 |
| Bra001591.1-P | Field mustard | nucleus | 55.83 | 63.08 |
| Bra021105.1-P | Field mustard | nucleus | 61.74 | 62.98 |
| CDX75824 | Canola | cytosol | 48.28 | 62.95 |
| CDY20117 | Canola | nucleus | 61.74 | 62.88 |
| HORVU3Hr1G109730.1 | Barley | cytosol | 15.6 | 59.01 |
| CDY21838 | Canola | cytosol | 62.73 | 58.86 |
| AT1G53023.1 | Thale cress | cytosol | 30.05 | 57.91 |
| AT1G53025.2 | Thale cress | nucleus | 48.11 | 52.6 |
| HORVU1Hr1G090980.2 | Barley | cytosol | 16.91 | 51.5 |
| KRH26136 | Soybean | cytosol | 24.96 | 50.0 |
| GSMUA_Achr7P25120_001 | Banana | cytosol | 24.14 | 49.16 |
| Zm00001d009007_P001 | Maize | cytosol | 18.72 | 46.53 |
| Os01t0677500-00 | Rice | cytosol | 25.62 | 45.22 |
| TraesCS5D01G272300.1 | Wheat | cytosol, nucleus, plastid | 24.79 | 44.15 |
| KRH26135 | Soybean | cytosol | 27.75 | 43.44 |
| Zm00001d015028_P001 | Maize | cytosol, mitochondrion, nucleus | 14.29 | 43.07 |
| Zm00001d051483_P001 | Maize | mitochondrion, nucleus, peroxisome | 14.29 | 43.07 |
| KXG31477 | Sorghum | mitochondrion, plastid | 24.96 | 41.3 |
| Zm00001d009513_P003 | Maize | cytosol | 26.77 | 41.06 |
| GSMUA_Achr6P22670_001 | Banana | cytosol | 30.21 | 40.17 |
| Zm00001d039280_P005 | Maize | mitochondrion, nucleus, plastid | 24.14 | 39.41 |
| TraesCS3B01G183600.1 | Wheat | mitochondrion, nucleus | 24.3 | 39.26 |
| TraesCS3D01G164800.2 | Wheat | mitochondrion, nucleus, plastid | 24.3 | 39.15 |
| TraesCS3A01G157200.1 | Wheat | mitochondrion, nucleus, plastid | 23.97 | 39.04 |
| Os09t0294300-01 | Rice | nucleus | 27.59 | 38.8 |
| HORVU3Hr1G031950.4 | Barley | mitochondrion | 23.32 | 38.69 |
| Zm00001d047959_P001 | Maize | cytosol | 14.12 | 38.56 |
| TraesCS3A01G157300.2 | Wheat | nucleus | 23.15 | 38.42 |
| TraesCS3A01G156300.1 | Wheat | nucleus, plastid | 28.57 | 38.33 |
| TraesCS3B01G183800.2 | Wheat | nucleus | 23.15 | 38.32 |
| TraesCS3D01G164900.3 | Wheat | nucleus | 23.15 | 38.32 |
| TraesCS3B01G183000.1 | Wheat | nucleus, plastid | 28.41 | 38.27 |
| Os05t0232500-01 | Rice | nucleus, plastid | 29.23 | 38.12 |
| EES17914 | Sorghum | plastid | 28.74 | 38.04 |
| TraesCS3D01G164200.1 | Wheat | nucleus, plastid | 28.08 | 37.92 |
| HORVU2Hr1G062530.3 | Barley | cytosol | 8.05 | 37.69 |
| HORVU5Hr1G000190.3 | Barley | cytosol | 8.05 | 37.69 |
| Os05t0557600-01 | Rice | cytosol | 31.03 | 37.13 |
| Zm00001d039285_P001 | Maize | cytosol, plastid | 27.42 | 37.11 |
| HORVU3Hr1G031890.10 | Barley | cytosol, nucleus | 23.97 | 36.68 |
| TraesCS5B01G264000.1 | Wheat | nucleus | 27.26 | 36.64 |
| TraesCS5D01G272400.1 | Wheat | nucleus | 26.93 | 36.2 |
| KXG31481 | Sorghum | nucleus | 27.26 | 36.17 |
| HORVU1Hr1G029800.11 | Barley | plastid | 28.24 | 36.06 |
| TraesCS1A01G129500.2 | Wheat | nucleus | 28.74 | 35.5 |
| HORVU3Hr1G031730.4 | Barley | nucleus, plastid | 27.91 | 35.42 |
| GSMUA_Achr9P00210_001 | Banana | plastid | 31.2 | 35.38 |
| GSMUA_Achr10P... | Banana | nucleus | 27.59 | 35.29 |
| Os01t0232500-01 | Rice | nucleus | 28.08 | 35.26 |
| EES19929 | Sorghum | nucleus | 28.9 | 34.71 |
| Zm00001d049101_P001 | Maize | cytosol | 8.87 | 34.62 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 31.69 | 34.4 |
| TraesCS1D01G396000.2 | Wheat | cytosol, mitochondrion, nucleus | 31.36 | 34.17 |
| TraesCS1A01G388000.1 | Wheat | cytosol, mitochondrion, nucleus | 31.36 | 34.05 |
| HORVU1Hr1G085630.1 | Barley | cytosol, nucleus | 32.35 | 34.02 |
| TraesCS1D01G125200.2 | Wheat | plastid | 28.9 | 33.78 |
| TraesCS3D01G269000.1 | Wheat | nucleus | 29.39 | 33.77 |
| TraesCS1B01G146400.2 | Wheat | plastid | 28.74 | 33.72 |
| TraesCS3A01G269200.1 | Wheat | nucleus | 29.23 | 33.58 |
| TraesCS3B01G303300.1 | Wheat | nucleus | 29.23 | 33.58 |
| KXG33109 | Sorghum | nucleus | 29.23 | 33.33 |
| Os01t0233900-01 | Rice | mitochondrion | 25.12 | 32.9 |
| KRH27240 | Soybean | cytosol | 37.6 | 32.53 |
| Solyc10g007000.2.1 | Tomato | cytosol | 34.98 | 31.93 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 38.26 | 31.07 |
| KRH22096 | Soybean | cytosol | 36.78 | 30.98 |
| PGSC0003DMT400064440 | Potato | nucleus | 35.96 | 30.08 |
| HORVU3Hr1G062370.3 | Barley | golgi | 28.74 | 29.71 |
| PGSC0003DMT400039746 | Potato | nucleus | 34.32 | 28.83 |
| Os01t0229900-01 | Rice | mitochondrion | 12.64 | 28.31 |
| Solyc12g013820.1.1 | Tomato | nucleus | 34.32 | 28.17 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 33.66 | 23.59 |
| AT2G33770.1 | Thale cress | nucleus | 25.29 | 16.98 |
| AT2G16920.1 | Thale cress | nucleus | 27.26 | 15.06 |
| Os03t0679300-01 | Rice | mitochondrion | 3.78 | 13.86 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EntrezGene:820772 | UniProt:A0A178VG79 | ProteinID:AAF35401.1 | ProteinID:AEE75657.1 |
| EMBL:AF361806 | ArrayExpress:AT3G15355 | EnsemblPlantsGene:AT3G15355 | RefSeq:AT3G15355 | TAIR:AT3G15355 | RefSeq:AT3G15355-TAIR-G |
| EnsemblPlants:AT3G15355.1 | TAIR:AT3G15355.1 | EMBL:AY059155 | Unigene:At.27040 | ProteinID:BAB02364.1 | EMBL:DQ027038 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 |
| GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_188154.1 | ProteinID:OAP04365.1 | PFAM:PF00179 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50127 |
| PANTHER:PTHR44273 | PANTHER:PTHR44273:SF5 | UniProt:Q9LUQ5 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC25 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000A403D | SEG:seg | : | : |
Description
UBC25Probable ubiquitin-conjugating enzyme E2 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ5]
Coordinates
chr3:+:5183641..5186929
Molecular Weight (calculated)
67772.7 Da
IEP (calculated)
4.654
GRAVY (calculated)
-0.583
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.