Factsheet for TraesCS3D01G164200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G183000.1	Wheat	nucleus, plastid	98.23	98.01
TraesCS3A01G156300.1	Wheat	nucleus, plastid	98.23	97.58
HORVU3Hr1G031730.4	Barley	nucleus, plastid	93.57	87.92
Zm00001d009007_P001	Maize	cytosol	39.25	72.24
Zm00001d039285_P001	Maize	cytosol, plastid	66.74	66.89
KXG31481	Sorghum	nucleus	66.52	65.36
Os01t0232500-01	Rice	nucleus	68.96	64.12
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	48.34	63.74
TraesCS1D01G125200.2	Wheat	plastid	66.74	57.77
CDY30673	Canola	nucleus	22.84	56.91
TraesCS5D01G272400.1	Wheat	nucleus	56.32	56.07
CDY51802	Canola	cytosol	24.17	53.17
Bra036393.1-P	Field mustard	cytosol, extracellular	9.53	50.59
KRH26136	Soybean	cytosol	31.04	46.05
TraesCS4D01G289700.1	Wheat	cytosol	22.84	44.98
TraesCS7D01G206600.1	Wheat	cytosol	23.06	44.64
CDY25883	Canola	cytosol	27.94	44.52
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	31.93	44.31
AT1G53023.1	Thale cress	cytosol	31.04	44.3
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	37.03	44.18
Bra041020.1-P	Field mustard	plastid	31.49	43.16
GSMUA_Achr10P...	Banana	nucleus	45.45	43.07
CDY25884	Canola	plastid	31.26	42.6
KRH58633	Soybean	cytosol, nucleus	40.8	41.07
TraesCS3D01G164900.3	Wheat	nucleus	33.26	40.76
PGSC0003DMT400047166	Potato	nucleus	41.02	40.04
KRH26135	Soybean	cytosol	34.37	39.85
Solyc07g053960.2.1	Tomato	nucleus	40.8	39.74
KRH42541	Soybean	nucleus	41.24	39.24
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	46.34	37.39
VIT_12s0028g03630.t01	Wine grape	nucleus	40.35	35.62
TraesCS3D01G269000.1	Wheat	nucleus	41.69	35.47
CDY55875	Canola	nucleus	33.04	34.89
CDX71178	Canola	cytosol	33.26	34.8
CDX82439	Canola	cytosol	34.59	33.99
Bra030965.1-P	Field mustard	nucleus	35.03	33.62
CDX75824	Canola	cytosol	34.15	32.98
CDY02528	Canola	cytosol	34.81	32.71
Bra040814.1-P	Field mustard	cytosol	33.48	32.47
CDY25886	Canola	cytosol	33.48	32.47
CDY47562	Canola	cytosol	34.59	32.37
CDY24125	Canola	cytosol	34.37	31.89
CDX98552	Canola	cytosol	38.14	31.62
Bra019007.1-P	Field mustard	cytosol	34.59	31.39
Bra027252.1-P	Field mustard	cytosol	38.14	31.27
Bra001591.1-P	Field mustard	nucleus	37.03	30.98
CDX97660	Canola	cytosol	37.92	30.98
CDY26018	Canola	cytosol	34.81	30.91
AT1G53025.2	Thale cress	nucleus	37.47	30.34
Bra021105.1-P	Field mustard	nucleus	38.58	29.15
CDY20117	Canola	nucleus	38.14	28.76
AT3G15355.1	Thale cress	nucleus	37.92	28.08
Solyc10g007000.2.1	Tomato	cytosol	41.02	27.74
CDY21838	Canola	cytosol	38.8	26.96
KRH27240	Soybean	cytosol	41.91	26.85
KRH22096	Soybean	cytosol	42.35	26.42
PGSC0003DMT400064440	Potato	nucleus	41.02	25.41
VIT_19s0014g02760.t01	Wine grape	nucleus	41.24	24.8
PGSC0003DMT400039746	Potato	nucleus	38.8	24.14
Solyc12g013820.1.1	Tomato	nucleus	38.58	23.45
KRH55293	Soybean	cytosol, peroxisome, plastid	36.14	18.76
TraesCS1D01G396300.1	Wheat	nucleus	34.37	18.15
TraesCS2D01G051900.1	Wheat	cytosol	31.71	14.58
TraesCS3D01G015300.1	Wheat	plasma membrane	32.15	14.41
TraesCS3D01G015200.1	Wheat	cytosol	31.71	14.3
TraesCS2D01G400600.1	Wheat	nucleus	31.71	14.3
TraesCS2D01G600300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.82	14.29
TraesCS3D01G032000.4	Wheat	nucleus	33.04	13.39

Protein Annotations

EnsemblPlants:TraesCS3D01G164200.1	EnsemblPlantsGene:TraesCS3D01G164200	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF7	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3D:+:135731797..135736030

Molecular Weight (calculated)

50659.2 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.725

Length

451 amino acids

Sequence
(BLAST)

001: MDTECRGPQQ GGSSCWATGA AAWSSSQQKR QRCEGSSSDQ VGSSTSASVQ MTESELPDTD YVENEEEDYY MDDDDDDCDD DNGDDSEYEF DEADFNQQLA
101: DKFDDLDLPP GVEATVPWLQ KLAANDEQDG ASDELVEDEI TRKYKAFQQF YTVQNFSDHH YANKSVGKTS REWAKRIQHD WKLLEKDLPA SIFVRVAEDR
201: MDLLRAAIIG PKGTPYHDGL FFFDAHFTSN YPSEPPLVYY HSGGLRLNPN LYNCGKVCLS LLGTWSGSGC EKWNSAHSTM LQVLVSIQAL ILNEKPYFNE
301: PGYAGSANTA TGQQHSVEYN KNTFLHSCRT MLYSLRRPPE HFGDLVAGHF RERGRTILAA CKHYLEGNMV GSEVPEEEEV EYDGTGASSS SSSSSVPKKQ
401: EVMRVDPLGR RTQFIDNLKT LFEDLLMEFN VKGADTRKFL EDKVKKNLPA A

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.