Factsheet for GSMUA_Achr10P22270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G109730.1	Barley	cytosol	21.43	63.35
HORVU1Hr1G090980.2	Barley	cytosol	23.95	57.0
CDY30673	Canola	nucleus	21.43	56.35
GSMUA_Achr7P25120_001	Banana	cytosol	35.29	56.19
Zm00001d009007_P001	Maize	cytosol	28.78	55.92
Bra036393.1-P	Field mustard	cytosol, extracellular	9.87	55.29
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	36.34	50.58
CDY51802	Canola	cytosol	21.43	49.76
GSMUA_Achr6P22670_001	Banana	cytosol	45.8	47.6
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	20.17	47.52
KRH26136	Soybean	cytosol	30.25	47.37
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	19.96	47.03
KXG31477	Sorghum	mitochondrion, plastid	36.13	46.74
Zm00001d039285_P001	Maize	cytosol, plastid	43.7	46.22
AT1G53023.1	Thale cress	cytosol	30.46	45.89
TraesCS3D01G164200.1	Wheat	nucleus, plastid	43.07	45.45
HORVU2Hr1G062530.3	Barley	cytosol	12.39	45.38
HORVU5Hr1G000190.3	Barley	cytosol	12.39	45.38
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	35.5	45.31
TraesCS3B01G183000.1	Wheat	nucleus, plastid	42.86	45.13
KXG31481	Sorghum	nucleus	43.49	45.1
TraesCS3A01G156300.1	Wheat	nucleus, plastid	42.86	44.93
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	35.5	44.83
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	35.29	44.44
Zm00001d047959_P001	Maize	cytosol	20.8	44.39
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	34.87	44.38
Os05t0232500-01	Rice	nucleus, plastid	43.49	44.33
Os01t0232500-01	Rice	nucleus	44.96	44.12
GSMUA_Achr9P00210_001	Banana	plastid	49.58	43.95
TraesCS5D01G272400.1	Wheat	nucleus	41.81	43.93
EES17914	Sorghum	plastid	42.44	43.91
TraesCS3B01G183800.2	Wheat	nucleus	33.4	43.21
HORVU3Hr1G031730.4	Barley	nucleus, plastid	43.49	43.12
CDY25883	Canola	cytosol	25.63	43.11
TraesCS3D01G164900.3	Wheat	nucleus	33.19	42.93
Bra041020.1-P	Field mustard	plastid	29.62	42.86
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	29.2	42.77
TraesCS5B01G264000.1	Wheat	nucleus	40.55	42.6
TraesCS3A01G157300.2	Wheat	nucleus	32.77	42.51
TraesCS1A01G129500.2	Wheat	nucleus	43.91	42.39
Zm00001d049101_P001	Maize	cytosol	13.87	42.31
HORVU3Hr1G031950.4	Barley	mitochondrion	32.35	41.96
HORVU1Hr1G029800.11	Barley	plastid	42.02	41.93
KRH26135	Soybean	cytosol	34.24	41.9
Solyc07g053960.2.1	Tomato	nucleus	40.76	41.9
PGSC0003DMT400047166	Potato	nucleus	40.55	41.77
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	34.87	41.71
CDY25884	Canola	plastid	28.78	41.39
KRH58633	Soybean	cytosol, nucleus	38.45	40.85
TraesCS1B01G146400.2	Wheat	plastid	42.65	39.11
KRH42541	Soybean	nucleus	38.87	39.03
TraesCS1D01G125200.2	Wheat	plastid	42.44	38.77
VIT_12s0028g03630.t01	Wine grape	nucleus	40.76	37.96
Os01t0233900-01	Rice	mitochondrion	36.34	37.2
CDX71178	Canola	cytosol	33.61	37.12
CDY55875	Canola	nucleus	30.88	34.43
CDX75824	Canola	cytosol	33.61	34.26
Bra030965.1-P	Field mustard	nucleus	33.61	34.04
CDX82439	Canola	cytosol	32.35	33.55
CDY02528	Canola	cytosol	33.4	33.12
CDY47562	Canola	cytosol	33.4	32.99
CDY24125	Canola	cytosol	33.61	32.92
Bra019007.1-P	Field mustard	cytosol	33.82	32.39
Bra027252.1-P	Field mustard	cytosol	37.4	32.36
CDY25886	Canola	cytosol	31.51	32.26
Bra040814.1-P	Field mustard	cytosol	31.51	32.26
CDX98552	Canola	cytosol	36.76	32.17
CDX97660	Canola	cytosol	37.18	32.07
CDY26018	Canola	cytosol	34.03	31.89
Bra001591.1-P	Field mustard	nucleus	35.71	31.54
AT1G53025.2	Thale cress	nucleus	33.82	28.9
Os01t0229900-01	Rice	mitochondrion	16.39	28.68
Bra021105.1-P	Field mustard	nucleus	35.92	28.64
Solyc10g007000.2.1	Tomato	cytosol	39.92	28.49
CDY20117	Canola	nucleus	35.71	28.43
AT3G15355.1	Thale cress	nucleus	35.29	27.59
KRH27240	Soybean	cytosol	40.34	27.27
KRH22096	Soybean	cytosol	41.18	27.11
CDY21838	Canola	cytosol	36.55	26.81
PGSC0003DMT400064440	Potato	nucleus	40.34	26.37
VIT_19s0014g02760.t01	Wine grape	nucleus	40.97	26.0
PGSC0003DMT400039746	Potato	nucleus	39.29	25.79
GSMUA_Achr9P00220_001	Banana	cytosol	26.26	25.25
Solyc12g013820.1.1	Tomato	nucleus	39.29	25.2
KRH55293	Soybean	cytosol, peroxisome, plastid	37.18	20.37
GSMUA_Achr9P06210_001	Banana	cytosol	36.55	19.46
GSMUA_Achr1P26360_001	Banana	nucleus	36.13	17.44
GSMUA_Achr8P34010_001	Banana	cytosol	34.87	16.21
Os03t0679300-01	Rice	mitochondrion	5.04	14.46

Protein Annotations

EnsemblPlants:GSMUA_Achr10P22270_001	EnsemblPlants:GSMUA_Achr10T22270_001	EnsemblPlantsGene:GSMUA_Achr10G22270_001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0002958403	UniProt:M0RKF2	MapMan:35.1

Description

Putative ubiquitin-conjugating enzyme domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G22270_001]

Coordinates

chr10:+:27503946..27510225

Molecular Weight (calculated)

53844.7 Da

IEP (calculated)

4.449

GRAVY (calculated)

-0.507

Length

476 amino acids

Sequence
(BLAST)

001: MEVSSPTGSS SSGIKRQRFQ VNLEGSSQIH RDVDPSSTDI ICESTLGCEA RETVIYDEDG KQKQVVSSNN ILGSIAYYGL QNDASASTSR SSEVYLQDCN
101: YYNDDEENNC NKDENVYDEE EDYNYDEDEG YEFYLEEDDK IDYGFKLAAQ FDDLDLPPGV EATVPWLDNS APKSSSNSKQ ETDIKFNSFK QFNIVQDFSD
201: HHFAKTYSSV MQAKDWMKKI QKEWKLLEKN LPDTILVRVY EDRMDLLRAV IVGPAGTPYH DGLFFFDAQF PPKFPQEPPV LHYHSHGLCL NPNLYKDGKV
301: CLSLLNTWYG KGCERWNPSE STMLQVLVSI QALILNEKPF FNEPGFELTA NTAEGHVKSL AYNEEIFLLS CRTMLYSLRG PPKHFAEFVA GHFCNKGHTI
401: LAACRAYMSG APVGSVIWEQ AQDVDRSDER LSISFRSSLK QLFEELLMEF SVKGADCDEF LNQKVKAGAA AALSLQ

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.