Factsheet for TraesCS3A01G157300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G183800.2	Wheat	nucleus	94.01	93.75
TraesCS3D01G164900.3	Wheat	nucleus	93.19	92.93
HORVU3Hr1G031950.4	Barley	mitochondrion	92.64	92.64
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	79.29	77.81
KXG31477	Sorghum	mitochondrion, plastid	67.57	67.39
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	66.48	65.42
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	34.33	62.38
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	33.52	60.89
Zm00001d047959_P001	Maize	cytosol	35.42	58.3
Zm00001d049101_P001	Maize	cytosol	23.98	56.41
Os01t0233900-01	Rice	mitochondrion	68.94	54.41
CDY30673	Canola	nucleus	24.52	49.72
CDY51802	Canola	cytosol	26.7	47.8
Bra036393.1-P	Field mustard	cytosol, extracellular	10.63	45.88
TraesCS3A01G030200.1	Wheat	endoplasmic reticulum	26.7	45.58
TraesCS2A01G441700.1	Wheat	cytosol	30.79	45.38
AT1G53023.1	Thale cress	cytosol	35.15	40.82
KRH26136	Soybean	cytosol	33.24	40.13
CDY25883	Canola	cytosol	30.79	39.93
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	34.33	38.77
Bra041020.1-P	Field mustard	plastid	34.06	37.99
CDY25884	Canola	plastid	33.52	37.16
KRH26135	Soybean	cytosol	37.87	35.73
TraesCS3A01G156300.1	Wheat	nucleus, plastid	41.42	33.48
GSMUA_Achr10P...	Banana	nucleus	42.51	32.77
KRH58633	Soybean	cytosol, nucleus	39.51	32.37
PGSC0003DMT400047166	Potato	nucleus	40.33	32.03
TraesCS3A01G269200.1	Wheat	nucleus	45.78	31.7
Solyc07g053960.2.1	Tomato	nucleus	39.78	31.53
TraesCS1A01G129500.2	Wheat	nucleus	41.96	31.24
CDY55875	Canola	nucleus	36.24	31.15
KRH42541	Soybean	nucleus	40.05	31.01
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	46.59	30.48
Bra030965.1-P	Field mustard	nucleus	38.42	30.0
CDX71178	Canola	cytosol	35.15	29.93
CDY02528	Canola	cytosol	38.42	29.38
CDY47562	Canola	cytosol	38.42	29.25
VIT_12s0028g03630.t01	Wine grape	nucleus	40.6	29.16
Bra040814.1-P	Field mustard	cytosol	36.78	29.03
CDY25886	Canola	cytosol	36.78	29.03
CDX75824	Canola	cytosol	35.97	28.27
CDY24125	Canola	cytosol	37.33	28.19
CDX82439	Canola	cytosol	35.15	28.1
Bra019007.1-P	Field mustard	cytosol	37.06	27.36
CDY26018	Canola	cytosol	36.78	26.57
CDX98552	Canola	cytosol	38.96	26.29
CDX97660	Canola	cytosol	38.69	25.72
Bra027252.1-P	Field mustard	cytosol	38.42	25.64
Bra001591.1-P	Field mustard	nucleus	37.6	25.6
AT1G53025.2	Thale cress	nucleus	37.87	24.96
Bra021105.1-P	Field mustard	nucleus	37.87	23.28
CDY20117	Canola	nucleus	37.87	23.24
AT3G15355.1	Thale cress	nucleus	38.42	23.15
KRH27240	Soybean	cytosol	41.42	21.59
KRH22096	Soybean	cytosol	42.23	21.44
CDY21838	Canola	cytosol	37.6	21.26
Solyc10g007000.2.1	Tomato	cytosol	38.15	20.99
VIT_19s0014g02760.t01	Wine grape	nucleus	42.51	20.8
PGSC0003DMT400039746	Potato	nucleus	38.42	19.45
PGSC0003DMT400064440	Potato	nucleus	38.15	19.23
Solyc12g013820.1.1	Tomato	nucleus	38.15	18.87
TraesCS1A01G388400.1	Wheat	cytosol	40.87	17.79
KRH55293	Soybean	cytosol, peroxisome, plastid	40.87	17.26
TraesCS3A01G030400.1	Wheat	plasma membrane	35.97	13.24
TraesCS3A01G031600.1	Wheat	cytosol	35.69	13.14
TraesCS2A01G403400.1	Wheat	cytosol	35.42	13.12
TraesCS2A01G586300.1	Wheat	nucleus	33.79	12.74
TraesCS3A01G047700.3	Wheat	nucleus	36.78	12.13

Protein Annotations

EnsemblPlants:TraesCS3A01G157300.2	EnsemblPlantsGene:TraesCS3A01G157300	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	ncoils:Coil	PANTHER:PTHR44273	PANTHER:PTHR44273:SF1	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:

Description

No Description!

Coordinates

chr3A:-:154072538..154076657

Molecular Weight (calculated)

41044.5 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.356

Length

367 amino acids

Sequence
(BLAST)

001: MVLNKLLQLF GVGKKKKRKD SKKKGKSINP VSQGAAPQST LNILASKSVL DPCSSGASTV LSLQKDEPGC SSNISSMIKE VNGSENEDHK LFNQFDVVQD
101: YSDHHYAKTS PGKTTKDWAK TIQNEWKLLQ RDLPESIYVR VYEDRIDLIR AAIVGPAGTP YHDGLFFFDV CFPPEYPRCP PKVHFHSSGL RLNPNLYESG
201: KVCLSLLNTW LGSGSEKWGK SNSTMLQVLV SIQGLVLNDK PYFNEPVIFS SKEKHSLGYN QTAFVLTCKL MLYLLQKPPK HFETLIVCHF HERERAILEA
301: CRAYASGMVV GSSVKDGRTY LHNKCFAGFK KSLDAQAELL AKELAANRLR AVELKREVPA ADKTMFP

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.