Factsheet for TraesCS1A01G129500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G029800.11	Barley	plastid	86.82	89.73
TraesCS1D01G125200.2	Wheat	plastid	93.51	88.48
TraesCS1B01G146400.2	Wheat	plastid	92.9	88.25
Os05t0232500-01	Rice	nucleus, plastid	72.62	76.66
EES17914	Sorghum	plastid	68.76	73.7
TraesCS3A01G156300.1	Wheat	nucleus, plastid	60.45	65.64
CDY30673	Canola	nucleus	19.68	53.59
CDY51802	Canola	cytosol	20.69	49.76
TraesCS3A01G030200.1	Wheat	endoplasmic reticulum	21.5	49.3
TraesCS2A01G441700.1	Wheat	cytosol	24.75	49.0
Bra036393.1-P	Field mustard	cytosol, extracellular	7.91	45.88
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	34.08	44.92
AT1G53023.1	Thale cress	cytosol	28.19	43.99
GSMUA_Achr10P...	Banana	nucleus	42.39	43.91
KRH26136	Soybean	cytosol	26.77	43.42
TraesCS3A01G157300.2	Wheat	nucleus	31.24	41.96
Bra041020.1-P	Field mustard	plastid	27.79	41.64
PGSC0003DMT400047166	Potato	nucleus	38.95	41.56
CDY25884	Canola	plastid	27.79	41.39
CDY25883	Canola	cytosol	23.73	41.34
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	27.18	41.23
Solyc07g053960.2.1	Tomato	nucleus	38.54	41.04
KRH58633	Soybean	cytosol, nucleus	36.71	40.4
KRH42541	Soybean	nucleus	37.12	38.61
KRH26135	Soybean	cytosol	30.22	38.3
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	41.58	36.54
VIT_12s0028g03630.t01	Wine grape	nucleus	37.73	36.4
TraesCS3A01G269200.1	Wheat	nucleus	37.73	35.09
Bra030965.1-P	Field mustard	nucleus	32.86	34.47
CDX71178	Canola	cytosol	29.82	34.11
CDX82439	Canola	cytosol	31.64	33.99
CDX75824	Canola	cytosol	32.05	33.83
CDY02528	Canola	cytosol	32.66	33.54
CDY47562	Canola	cytosol	32.66	33.4
CDY55875	Canola	nucleus	28.8	33.26
CDX98552	Canola	cytosol	36.11	32.72
CDX97660	Canola	cytosol	36.31	32.43
Bra027252.1-P	Field mustard	cytosol	35.9	32.18
CDY24125	Canola	cytosol	31.64	32.1
Bra019007.1-P	Field mustard	cytosol	31.85	31.59
Bra040814.1-P	Field mustard	cytosol	29.61	31.4
CDY25886	Canola	cytosol	29.61	31.4
CDY26018	Canola	cytosol	32.25	31.3
Bra001591.1-P	Field mustard	nucleus	34.08	31.17
AT1G53025.2	Thale cress	nucleus	34.89	30.88
Bra021105.1-P	Field mustard	nucleus	36.71	30.32
CDY20117	Canola	nucleus	36.31	29.93
AT3G15355.1	Thale cress	nucleus	35.5	28.74
CDY21838	Canola	cytosol	36.11	27.43
Solyc10g007000.2.1	Tomato	cytosol	36.11	26.69
KRH27240	Soybean	cytosol	37.53	26.28
KRH22096	Soybean	cytosol	38.13	26.0
PGSC0003DMT400039746	Potato	nucleus	36.31	24.69
PGSC0003DMT400064440	Potato	nucleus	36.11	24.45
VIT_19s0014g02760.t01	Wine grape	nucleus	37.12	24.4
Solyc12g013820.1.1	Tomato	nucleus	36.71	24.39
KRH55293	Soybean	cytosol, peroxisome, plastid	33.67	19.1
TraesCS1A01G388400.1	Wheat	cytosol	32.66	19.1
TraesCS2A01G403400.1	Wheat	cytosol	30.83	15.34
TraesCS3A01G030400.1	Wheat	plasma membrane	30.43	15.05
TraesCS2A01G586300.1	Wheat	nucleus	29.41	14.9
TraesCS3A01G031600.1	Wheat	cytosol	30.02	14.84
TraesCS3A01G047700.3	Wheat	nucleus	31.24	13.84

Protein Annotations

EnsemblPlants:TraesCS1A01G129500.2	EnsemblPlantsGene:TraesCS1A01G129500	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF3	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1A:+:166315880..166322205

Molecular Weight (calculated)

54851.4 Da

IEP (calculated)

4.537

GRAVY (calculated)

-0.652

Length

493 amino acids

Sequence
(BLAST)

001: MDASECAAPP PSSKNQPSIV FPGDFLMGSL ICRRYPHMQG GASSLSSSCR AADAAAWDAV KQQKRQRCQG SSSGDKVGSC TESNSFKASE AELQNFDSGE
101: IEEEDYYIDD EDEGCYDDDN EGSDYEFDES DFNQQLADKF DDLDLPPGVE ASVPWLQKAA TDDGPGNFKS MSEIEDEIGK KYKFFKQFDT VEDFSDHHYA
201: NKPVGKAGKE WTKRIQHDWK LLENDLPASI YVRVSENRMD LLRAVMIGPQ GTPYHDGLFF FDAQFPASYP ASPPTVYYHS GGLRLNPNLY ACGKVCLSLL
301: GTWEGHGCEK WNSAHSTMLQ VLISIQALVL NEKPYFNEPG YETYANNASG QRTALEYNDT TFQYSCRTML YSLRRAPQHF EDLVAGHFRE RGRAILAACK
401: YYMEGNKVGS VVPDEDDEDK ELESANAEGS SSGVKPKNNQ VDLRAGAGVV RPASFKTNME VLFEELLMEF NVKGADTKKF CAEKLKKSQP AAA

Best Arabidopsis Sequence Match ( AT1G53023.1 )
(BLAST)

001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV

Arabidopsis Description

UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.