Factsheet for Bra041020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25884	Canola	plastid	92.1	91.54
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	74.77	75.69
Bra036393.1-P	Field mustard	cytosol, extracellular	19.45	75.29
AT1G53023.1	Thale cress	cytosol	58.66	61.08
Bra040814.1-P	Field mustard	cytosol	81.16	57.42
HORVU3Hr1G109730.1	Barley	cytosol	27.66	56.52
Bra030965.1-P	Field mustard	nucleus	76.29	53.4
HORVU1Hr1G090980.2	Barley	cytosol	31.31	51.5
Bra019007.1-P	Field mustard	cytosol	75.38	49.9
GSMUA_Achr7P25120_001	Banana	cytosol	42.25	46.49
KRH26136	Soybean	cytosol	42.25	45.72
Zm00001d009007_P001	Maize	cytosol	32.22	43.27
AT1G53025.2	Thale cress	nucleus	70.21	41.47
KRH26135	Soybean	cytosol	47.72	40.36
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	41.03	39.47
HORVU2Hr1G062530.3	Barley	cytosol	15.2	38.46
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	23.4	38.12
Os01t0677500-00	Rice	cytosol	39.82	37.97
HORVU5Hr1G000190.3	Barley	cytosol	14.89	37.69
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	23.1	37.62
KXG31477	Sorghum	mitochondrion, plastid	40.43	36.14
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	40.12	35.29
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	40.43	35.28
Bra001591.1-P	Field mustard	nucleus	57.45	35.06
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	40.12	34.92
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	39.21	34.58
TraesCS3B01G183800.2	Wheat	nucleus	38.3	34.24
HORVU3Hr1G031950.4	Barley	mitochondrion	37.99	34.06
TraesCS3A01G157300.2	Wheat	nucleus	37.99	34.06
TraesCS3D01G164900.3	Wheat	nucleus	37.69	33.7
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	40.73	33.67
Zm00001d047959_P001	Maize	cytosol	22.8	33.63
Bra027252.1-P	Field mustard	cytosol	55.32	33.09
Zm00001d009513_P003	Maize	cytosol	39.82	33.0
Os09t0294300-01	Rice	nucleus	41.95	31.87
TraesCS3D01G164200.1	Wheat	nucleus, plastid	43.16	31.49
TraesCS3A01G156300.1	Wheat	nucleus, plastid	43.16	31.28
GSMUA_Achr6P22670_001	Banana	cytosol	43.47	31.22
TraesCS3B01G183000.1	Wheat	nucleus, plastid	42.55	30.97
Zm00001d039285_P001	Maize	cytosol, plastid	42.25	30.89
Bra021105.1-P	Field mustard	nucleus	55.93	30.82
Zm00001d049101_P001	Maize	cytosol	14.59	30.77
KXG31481	Sorghum	nucleus	42.86	30.72
TraesCS5B01G264000.1	Wheat	nucleus	41.64	30.24
EES17914	Sorghum	plastid	41.95	30.0
TraesCS5D01G272400.1	Wheat	nucleus	41.03	29.8
GSMUA_Achr10P...	Banana	nucleus	42.86	29.62
HORVU3Hr1G031730.4	Barley	nucleus, plastid	42.86	29.38
Os05t0232500-01	Rice	nucleus, plastid	41.64	29.34
Os01t0232500-01	Rice	nucleus	42.86	29.07
Os01t0233900-01	Rice	mitochondrion	40.73	28.82
EES19929	Sorghum	nucleus	44.38	28.8
HORVU1Hr1G029800.11	Barley	plastid	41.34	28.51
Os05t0557600-01	Rice	cytosol	44.07	28.49
TraesCS1A01G129500.2	Wheat	nucleus	41.64	27.79
GSMUA_Achr9P00210_001	Banana	plastid	44.07	27.0
TraesCS3B01G303300.1	Wheat	nucleus	42.55	26.42
TraesCS3D01G269000.1	Wheat	nucleus	42.55	26.42
TraesCS3A01G269200.1	Wheat	nucleus	42.55	26.42
TraesCS1B01G146400.2	Wheat	plastid	41.64	26.4
TraesCS1D01G125200.2	Wheat	plastid	41.64	26.3
KXG33109	Sorghum	nucleus	41.95	25.84
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	43.77	25.76
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	43.77	25.67
TraesCS1B01G415500.2	Wheat	nucleus	43.77	25.67
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	43.47	24.7
Solyc10g007000.2.1	Tomato	cytosol	49.54	24.44
HORVU3Hr1G062370.3	Barley	golgi	43.16	24.11
KRH27240	Soybean	cytosol	51.37	24.01
KRH22096	Soybean	cytosol	50.76	23.1
PGSC0003DMT400064440	Potato	nucleus	50.15	22.66
Solyc12g013820.1.1	Tomato	nucleus	49.85	22.1
PGSC0003DMT400039746	Potato	nucleus	48.63	22.07
VIT_19s0014g02760.t01	Wine grape	nucleus	50.15	22.0
Os01t0229900-01	Rice	mitochondrion	17.63	21.32
KRH55293	Soybean	cytosol, peroxisome, plastid	48.02	18.18
Bra021874.1-P	Field mustard	nucleus	42.86	16.3
Bra017778.1-P	Field mustard	cytosol	40.12	14.75
Bra013040.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	35.56	9.41
Os03t0679300-01	Rice	mitochondrion	3.34	6.63

Protein Annotations

EnsemblPlants:Bra041020.1	EnsemblPlants:Bra041020.1-P	EnsemblPlantsGene:Bra041020	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	PFAM:PF00179	PFscan:PS50127
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI000253EBC3	UniProt:M4FIU1	MapMan:35.1

Description

AT1G53020 (E=2e-122) UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase

Coordinates

chrScaffold000383:-:14390..15704

Molecular Weight (calculated)

37322.2 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.453

Length

329 amino acids

Sequence
(BLAST)

001: MGMSTTDQPW GCPNSSSNRT SKPSRSSSSH PRAPVEVVSS AQANFLRHFK RFDTVDDFSD HHFVSKGNAS KQHSKTWVKK VQADWKIFLE NNLPETIFVR
101: ACESRMDLMR AVIIGAEGTP YHDGLFFFDI HFPDNYPWVP PMVHYHSGGL RINPNLYTSG KVCLSLLGTW NGNTREQWLP RESTMLQLLV SIQALILNQK
201: PYFNEPSYER TKGTPSGEAY SKVYSENVYI LSLRTMVYGM RKPPKHFEEF VHSHYFERAH DLVKASNAYI EGAPVGSLVK GTSQGGSMQF RNEVAVFMKT
301: VVDEFVKLGV NEVEDILEPP PVIHTNTSR

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.