Factsheet for TraesCS3D01G164800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	95.77	96.79
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	96.03	96.29
HORVU3Hr1G109730.1	Barley	cytosol	38.1	89.44
HORVU1Hr1G090980.2	Barley	cytosol	46.3	87.5
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	87.3	82.91
HORVU2Hr1G062530.3	Barley	cytosol	28.04	81.54
HORVU5Hr1G000190.3	Barley	cytosol	27.78	80.77
TraesCS3D01G164900.3	Wheat	nucleus	76.19	78.26
KXG31477	Sorghum	mitochondrion, plastid	69.84	71.74
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	67.2	68.1
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	36.24	67.82
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	35.71	66.83
Zm00001d047959_P001	Maize	cytosol	36.77	62.33
Zm00001d049101_P001	Maize	cytosol	24.6	59.62
Os01t0233900-01	Rice	mitochondrion	70.9	57.63
CDY30673	Canola	nucleus	25.66	53.59
Bra036393.1-P	Field mustard	cytosol, extracellular	11.64	51.76
TraesCS7D01G206600.1	Wheat	cytosol	30.16	48.93
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	43.92	48.54
CDY51802	Canola	cytosol	25.66	47.32
TraesCS4D01G289700.1	Wheat	cytosol	27.25	44.98
KRH26136	Soybean	cytosol	35.19	43.75
AT1G53023.1	Thale cress	cytosol	36.24	43.35
CDY25883	Canola	cytosol	30.16	40.28
Bra041020.1-P	Field mustard	plastid	34.92	40.12
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	34.39	40.0
CDY25884	Canola	plastid	33.86	38.67
KRH26135	Soybean	cytosol	39.15	38.05
TraesCS3D01G164200.1	Wheat	nucleus, plastid	44.18	37.03
TraesCS5D01G272400.1	Wheat	nucleus	43.65	36.42
GSMUA_Achr10P...	Banana	nucleus	44.44	35.29
PGSC0003DMT400047166	Potato	nucleus	42.33	34.63
Solyc07g053960.2.1	Tomato	nucleus	42.06	34.34
KRH58633	Soybean	cytosol, nucleus	40.48	34.15
TraesCS3D01G269000.1	Wheat	nucleus	47.35	33.77
CDY55875	Canola	nucleus	37.3	33.02
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	48.41	32.74
KRH42541	Soybean	nucleus	41.01	32.7
TraesCS1D01G125200.2	Wheat	plastid	44.97	32.63
Bra030965.1-P	Field mustard	nucleus	39.68	31.91
CDX71178	Canola	cytosol	35.98	31.55
CDY47562	Canola	cytosol	40.21	31.54
CDY02528	Canola	cytosol	39.95	31.46
Bra040814.1-P	Field mustard	cytosol	38.62	31.4
CDY25886	Canola	cytosol	38.62	31.4
VIT_12s0028g03630.t01	Wine grape	nucleus	42.06	31.12
CDY24125	Canola	cytosol	39.68	30.86
CDX75824	Canola	cytosol	37.3	30.19
CDX82439	Canola	cytosol	36.51	30.07
Bra019007.1-P	Field mustard	cytosol	39.42	29.98
CDY26018	Canola	cytosol	39.42	29.33
CDX98552	Canola	cytosol	40.74	28.31
CDX97660	Canola	cytosol	41.27	28.26
Bra027252.1-P	Field mustard	cytosol	41.01	28.18
Bra001591.1-P	Field mustard	nucleus	39.42	27.64
AT1G53025.2	Thale cress	nucleus	38.36	26.03
Bra021105.1-P	Field mustard	nucleus	39.68	25.13
CDY20117	Canola	nucleus	39.68	25.08
AT3G15355.1	Thale cress	nucleus	39.15	24.3
CDY21838	Canola	cytosol	39.42	22.96
Solyc10g007000.2.1	Tomato	cytosol	40.48	22.94
KRH27240	Soybean	cytosol	42.06	22.59
KRH22096	Soybean	cytosol	42.86	22.41
VIT_19s0014g02760.t01	Wine grape	nucleus	42.86	21.6
PGSC0003DMT400064440	Potato	nucleus	40.21	20.88
PGSC0003DMT400039746	Potato	nucleus	39.42	20.55
Solyc12g013820.1.1	Tomato	nucleus	39.15	19.95
TraesCS1D01G396300.1	Wheat	nucleus	41.27	18.27
KRH55293	Soybean	cytosol, peroxisome, plastid	41.27	17.95
TraesCS2D01G051900.1	Wheat	cytosol	37.04	14.27
TraesCS2D01G400600.1	Wheat	nucleus	36.77	13.9
TraesCS2D01G600300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.92	13.57
TraesCS3D01G015200.1	Wheat	cytosol	35.71	13.5
TraesCS3D01G015300.1	Wheat	plasma membrane	35.71	13.42
TraesCS3D01G032000.4	Wheat	nucleus	38.36	13.03

Protein Annotations

EnsemblPlants:TraesCS3D01G164800.2	EnsemblPlantsGene:TraesCS3D01G164800	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44273	PANTHER:PTHR44273:SF1	PFAM:PF00179	PFscan:PS50127	SEG:seg
SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3D:-:136403974..136408320

Molecular Weight (calculated)

41999.0 Da

IEP (calculated)

9.330

GRAVY (calculated)

-0.460

Length

378 amino acids

Sequence
(BLAST)

001: MVLKKLLQFF GVGKKKKKNS NKKGKSIDPL WQGASAAPHS TVNVLTSNIL LDPCSSGSGN VLSLQKHEPE CSSNISSTIR AVDGSKNKDQ KLFNQFDVVQ
101: DYSDHHYAKT SPGKTSKDWT KTIQNEWKLL QRDLPGSIYV RVYEDRIDLL RAAIVGPSGT PYHDGLFFFD VRFPPEYPRC PPKVYYHSGG LRLNPNLYES
201: GKVCLSLLNT WWGSGCEKWS KSNSTMLQVL ISIQGLVLND KPYFNEPGYK NTVNTPVGEK HSMAYNQTAF VLSCKTMLYS LRNPPKHFET LVVHHFHERE
301: RAILDACSAY ASGIIVGSSV RDGAKYACDK CFAGFKKSLD AHTELLAKEL AKNRAQAPEL KGDTPAADEI ASTSLGQT

Best Arabidopsis Sequence Match ( AT1G53023.1 )
(BLAST)

001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV

Arabidopsis Description

UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.