Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G157200.1 | Wheat | mitochondrion, nucleus, plastid | 96.55 | 97.33 |
| TraesCS3D01G164800.2 | Wheat | mitochondrion, nucleus, plastid | 96.29 | 96.03 |
| HORVU3Hr1G109730.1 | Barley | cytosol | 38.73 | 90.68 |
| HORVU1Hr1G090980.2 | Barley | cytosol | 46.68 | 88.0 |
| HORVU3Hr1G031890.10 | Barley | cytosol, nucleus | 88.06 | 83.42 |
| HORVU2Hr1G062530.3 | Barley | cytosol | 28.38 | 82.31 |
| HORVU5Hr1G000190.3 | Barley | cytosol | 27.85 | 80.77 |
| TraesCS3B01G183800.2 | Wheat | nucleus | 77.98 | 79.89 |
| KXG31477 | Sorghum | mitochondrion, plastid | 70.82 | 72.55 |
| Zm00001d039280_P005 | Maize | mitochondrion, nucleus, plastid | 68.17 | 68.9 |
| Zm00001d051483_P001 | Maize | mitochondrion, nucleus, peroxisome | 36.34 | 67.82 |
| Zm00001d015028_P001 | Maize | cytosol, mitochondrion, nucleus | 35.81 | 66.83 |
| Zm00001d047959_P001 | Maize | cytosol | 36.87 | 62.33 |
| Zm00001d049101_P001 | Maize | cytosol | 24.67 | 59.62 |
| Os01t0233900-01 | Rice | mitochondrion | 71.09 | 57.63 |
| CDY30673 | Canola | nucleus | 26.26 | 54.7 |
| Bra036393.1-P | Field mustard | cytosol, extracellular | 12.2 | 54.12 |
| TraesCS7B01G110500.1 | Wheat | cytosol, plastid, vacuole | 29.71 | 48.07 |
| CDY51802 | Canola | cytosol | 25.73 | 47.32 |
| TraesCS3B01G029300.1 | Wheat | peroxisome | 25.73 | 45.12 |
| KRH26136 | Soybean | cytosol | 35.54 | 44.08 |
| AT1G53023.1 | Thale cress | cytosol | 36.87 | 43.99 |
| Bra041020.1-P | Field mustard | plastid | 35.28 | 40.43 |
| Bra038095.1-P | Field mustard | cytosol, nucleus, peroxisome | 34.75 | 40.31 |
| CDY25883 | Canola | cytosol | 30.24 | 40.28 |
| CDY25884 | Canola | plastid | 34.22 | 38.97 |
| KRH26135 | Soybean | cytosol | 39.79 | 38.56 |
| TraesCS3B01G183000.1 | Wheat | nucleus, plastid | 43.77 | 36.5 |
| TraesCS5B01G264000.1 | Wheat | nucleus | 43.77 | 36.42 |
| GSMUA_Achr10P... | Banana | nucleus | 44.83 | 35.5 |
| PGSC0003DMT400047166 | Potato | nucleus | 41.91 | 34.2 |
| KRH58633 | Soybean | cytosol, nucleus | 40.58 | 34.15 |
| Solyc07g053960.2.1 | Tomato | nucleus | 41.64 | 33.91 |
| TraesCS3B01G303300.1 | Wheat | nucleus | 47.21 | 33.58 |
| CDY55875 | Canola | nucleus | 37.67 | 33.26 |
| KRH42541 | Soybean | nucleus | 41.11 | 32.7 |
| TraesCS1B01G415500.2 | Wheat | nucleus | 48.54 | 32.62 |
| TraesCS1B01G146400.2 | Wheat | plastid | 44.56 | 32.37 |
| CDX71178 | Canola | cytosol | 36.6 | 32.02 |
| Bra030965.1-P | Field mustard | nucleus | 39.79 | 31.91 |
| Bra040814.1-P | Field mustard | cytosol | 38.99 | 31.61 |
| CDY25886 | Canola | cytosol | 38.99 | 31.61 |
| CDY02528 | Canola | cytosol | 40.05 | 31.46 |
| CDY47562 | Canola | cytosol | 40.05 | 31.33 |
| VIT_12s0028g03630.t01 | Wine grape | nucleus | 42.18 | 31.12 |
| CDY24125 | Canola | cytosol | 38.99 | 30.25 |
| CDX75824 | Canola | cytosol | 37.4 | 30.19 |
| CDX82439 | Canola | cytosol | 36.6 | 30.07 |
| Bra019007.1-P | Field mustard | cytosol | 38.73 | 29.38 |
| CDY26018 | Canola | cytosol | 38.73 | 28.74 |
| CDX98552 | Canola | cytosol | 40.58 | 28.12 |
| CDX97660 | Canola | cytosol | 41.11 | 28.08 |
| Bra027252.1-P | Field mustard | cytosol | 40.85 | 28.0 |
| Bra001591.1-P | Field mustard | nucleus | 39.52 | 27.64 |
| AT1G53025.2 | Thale cress | nucleus | 38.73 | 26.21 |
| Bra021105.1-P | Field mustard | nucleus | 39.79 | 25.13 |
| CDY20117 | Canola | nucleus | 39.79 | 25.08 |
| AT3G15355.1 | Thale cress | nucleus | 39.26 | 24.3 |
| CDY21838 | Canola | cytosol | 39.52 | 22.96 |
| Solyc10g007000.2.1 | Tomato | cytosol | 40.32 | 22.79 |
| KRH27240 | Soybean | cytosol | 42.44 | 22.73 |
| KRH22096 | Soybean | cytosol | 43.24 | 22.55 |
| VIT_19s0014g02760.t01 | Wine grape | nucleus | 43.5 | 21.87 |
| PGSC0003DMT400064440 | Potato | nucleus | 40.05 | 20.74 |
| PGSC0003DMT400039746 | Potato | nucleus | 38.99 | 20.28 |
| Solyc12g013820.1.1 | Tomato | nucleus | 38.73 | 19.68 |
| TraesCS1B01G415800.1 | Wheat | cytosol | 41.38 | 18.48 |
| KRH55293 | Soybean | cytosol, peroxisome, plastid | 41.91 | 18.18 |
| TraesCS5B01G359000.1 | Wheat | cytosol | 34.48 | 14.56 |
| TraesCS3B01G029100.1 | Wheat | cytosol, nucleus, plasma membrane | 37.67 | 14.3 |
| TraesCS2B01G421500.1 | Wheat | golgi, mitochondrion, plasma membrane | 36.6 | 14.17 |
| TraesCS3B01G029000.1 | Wheat | cytosol, nucleus, plasma membrane | 36.6 | 13.94 |
| TraesCS2B01G596800.1 | Wheat | cytosol | 32.63 | 13.18 |
| TraesCS3B01G034500.5 | Wheat | nucleus | 38.2 | 12.93 |
| TraesCS2B01G461900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 34.22 | 12.45 |
| TraesCS2B01G590500.1 | Wheat | cytosol | 8.75 | 5.38 |
| TraesCS2B01G590700.1 | Wheat | cytosol | 8.49 | 4.92 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G183600.1 | EnsemblPlantsGene:TraesCS3B01G183600 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44273 | PANTHER:PTHR44273:SF1 | PFAM:PF00179 | PFscan:PS50127 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:-:194760344..194764814
Molecular Weight (calculated)
41774.8 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.406
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLKKLLQLF GVGKKKKKNS NKKGKSIDPL WQGASAAPHS TVNVLASNIL LDPCSSGSGN VLSLQKHEPE CSSNISSMIK AADGSENEDH KLFNQFDVVQ
101: DYSDHHYAKT SPGKMSKDWT KTIQNEWKLL QRDLPGSIYV RVYEDRIDLL RAAIVGPSGT PYHDGLFFFD VRFPPEYPRC PPKVYYHSGG LRLNPNLYES
201: GKVCLSLLNT WWGSGCEKWS KSNSTMLQVL ISIQGLVLND KPYFNEPGYK NTVNTPLGEK HSMAYNQTAF VLSCKTMLYS LRKPPKHFET LVVHHFHERE
301: HAILDACSAY ASGIIVGSSV RDGAKYACDK CFAGFKKSLD AHTELLAKEL ANRAQALELK GDTPAADGIA STSLGQT
101: DYSDHHYAKT SPGKMSKDWT KTIQNEWKLL QRDLPGSIYV RVYEDRIDLL RAAIVGPSGT PYHDGLFFFD VRFPPEYPRC PPKVYYHSGG LRLNPNLYES
201: GKVCLSLLNT WWGSGCEKWS KSNSTMLQVL ISIQGLVLND KPYFNEPGYK NTVNTPLGEK HSMAYNQTAF VLSCKTMLYS LRKPPKHFET LVVHHFHERE
301: HAILDACSAY ASGIIVGSSV RDGAKYACDK CFAGFKKSLD AHTELLAKEL ANRAQALELK GDTPAADGIA STSLGQT
001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV
Arabidopsis Description
UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.