Factsheet for Solyc10g007000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064440	Potato	nucleus	90.1	82.55
CDY30673	Canola	nucleus	16.79	61.88
HORVU3Hr1G109730.1	Barley	cytosol	14.39	59.63
Bra036393.1-P	Field mustard	cytosol, extracellular	7.5	58.82
CDY51802	Canola	cytosol	17.24	56.1
HORVU1Hr1G090980.2	Barley	cytosol	16.49	55.0
KRH26136	Soybean	cytosol	24.89	54.61
GSMUA_Achr7P25120_001	Banana	cytosol	23.99	53.51
AT1G53023.1	Thale cress	cytosol	24.29	51.27
Bra038095.1-P	Field mustard	cytosol, nucleus, peroxisome	24.59	50.46
CDY25883	Canola	cytosol	21.29	50.18
Bra041020.1-P	Field mustard	plastid	24.44	49.54
CDY25884	Canola	plastid	24.14	48.64
KRH26135	Soybean	cytosol	28.19	48.33
Os01t0677500-00	Rice	cytosol	24.89	48.12
Os09t0294300-01	Rice	nucleus	30.88	47.58
Solyc12g013820.1.1	Tomato	nucleus	52.77	47.44
Zm00001d009007_P001	Maize	cytosol	17.39	47.35
CDX71178	Canola	cytosol	29.98	46.4
HORVU2Hr1G062530.3	Barley	cytosol	9.0	46.15
HORVU5Hr1G000190.3	Barley	cytosol	8.85	45.38
Solyc07g053960.2.1	Tomato	nucleus	31.03	44.71
Zm00001d015028_P001	Maize	cytosol, mitochondrion, nucleus	13.19	43.56
Zm00001d051483_P001	Maize	mitochondrion, nucleus, peroxisome	13.19	43.56
CDY55875	Canola	nucleus	27.74	43.33
GSMUA_Achr6P22670_001	Banana	cytosol	29.69	43.23
TraesCS5D01G272300.1	Wheat	cytosol, nucleus, plastid	22.04	42.98
Os05t0557600-01	Rice	cytosol	32.68	42.83
EES19929	Sorghum	nucleus	32.38	42.6
Bra030965.1-P	Field mustard	nucleus	29.98	42.55
Zm00001d009513_P003	Maize	cytosol	25.19	42.32
CDY24125	Canola	cytosol	30.58	41.98
CDY47562	Canola	cytosol	30.28	41.91
CDY02528	Canola	cytosol	29.98	41.67
Bra019007.1-P	Field mustard	cytosol	30.73	41.25
CDY26018	Canola	cytosol	31.33	41.14
TraesCS3D01G164200.1	Wheat	nucleus, plastid	27.74	41.02
TraesCS3B01G183000.1	Wheat	nucleus, plastid	27.74	40.93
Zm00001d047959_P001	Maize	cytosol	13.64	40.81
GSMUA_Achr9P00210_001	Banana	plastid	32.83	40.78
KXG31477	Sorghum	mitochondrion, plastid	22.49	40.76
TraesCS3A01G156300.1	Wheat	nucleus, plastid	27.59	40.53
CDX82439	Canola	cytosol	27.89	40.52
TraesCS3D01G164800.2	Wheat	mitochondrion, nucleus, plastid	22.94	40.48
TraesCS3B01G183600.1	Wheat	mitochondrion, nucleus	22.79	40.32
TraesCS3A01G157200.1	Wheat	mitochondrion, nucleus, plastid	22.49	40.11
CDY25886	Canola	cytosol	27.89	40.0
Bra040814.1-P	Field mustard	cytosol	27.89	40.0
TraesCS1B01G415500.2	Wheat	nucleus	33.58	39.93
GSMUA_Achr10P...	Banana	nucleus	28.49	39.92
Zm00001d039285_P001	Maize	cytosol, plastid	26.84	39.78
TraesCS1A01G388000.1	Wheat	cytosol, mitochondrion, nucleus	33.28	39.57
TraesCS1D01G396000.2	Wheat	cytosol, mitochondrion, nucleus	33.13	39.53
TraesCS3B01G303300.1	Wheat	nucleus	31.33	39.43
TraesCS3D01G269000.1	Wheat	nucleus	31.33	39.43
Zm00001d039280_P005	Maize	mitochondrion, nucleus, plastid	22.04	39.41
TraesCS3A01G269200.1	Wheat	nucleus	31.18	39.25
TraesCS3B01G183800.2	Wheat	nucleus	21.44	38.86
CDX98552	Canola	cytosol	31.48	38.6
KXG33109	Sorghum	nucleus	30.88	38.58
KXG31481	Sorghum	nucleus	26.54	38.56
HORVU3Hr1G031950.4	Barley	mitochondrion	21.14	38.42
TraesCS3D01G164900.3	Wheat	nucleus	21.14	38.32
TraesCS3A01G157300.2	Wheat	nucleus	20.99	38.15
HORVU3Hr1G031730.4	Barley	nucleus, plastid	27.44	38.12
CDX75824	Canola	cytosol	26.69	38.12
HORVU3Hr1G031890.10	Barley	cytosol, nucleus	22.49	37.69
CDX97660	Canola	cytosol	31.18	37.68
HORVU1Hr1G085630.1	Barley	cytosol, nucleus	32.53	37.48
Bra027252.1-P	Field mustard	cytosol	30.88	37.45
EES17914	Sorghum	plastid	25.79	37.39
Bra001591.1-P	Field mustard	nucleus	30.13	37.29
Zm00001d049101_P001	Maize	cytosol	8.7	37.18
KRH27240	Soybean	cytosol	38.98	36.93
Os05t0232500-01	Rice	nucleus, plastid	25.79	36.83
AT1G53025.2	Thale cress	nucleus	30.73	36.8
VIT_19s0014g02760.t01	Wine grape	nucleus	41.38	36.8
TraesCS5B01G264000.1	Wheat	nucleus	24.89	36.64
KRH22096	Soybean	cytosol	39.28	36.24
TraesCS5D01G272400.1	Wheat	nucleus	24.59	36.2
TraesCS1A01G129500.2	Wheat	nucleus	26.69	36.11
HORVU1Hr1G029800.11	Barley	plastid	25.79	36.06
Bra021105.1-P	Field mustard	nucleus	32.23	36.01
CDY20117	Canola	nucleus	32.23	35.95
Os01t0232500-01	Rice	nucleus	26.09	35.88
HORVU3Hr1G062370.3	Barley	golgi	31.18	35.31
AT3G15355.1	Thale cress	nucleus	31.93	34.98
TraesCS1B01G146400.2	Wheat	plastid	26.24	33.72
TraesCS1D01G125200.2	Wheat	plastid	26.24	33.59
CDY21838	Canola	cytosol	32.23	33.13
Os01t0233900-01	Rice	mitochondrion	23.09	33.12
Solyc01g079290.1.1	Tomato	cytosol	13.19	30.99
Os01t0229900-01	Rice	mitochondrion	11.99	29.41
KRH55293	Soybean	cytosol, peroxisome, plastid	34.63	26.58
Solyc02g078210.2.1	Tomato	cytosol	27.44	19.78
Solyc01g111680.2.1	Tomato	nucleus	27.14	18.25
Os03t0679300-01	Rice	mitochondrion	3.9	15.66

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4CXN0	PFAM:PF00179	PFscan:PS50127
PANTHER:PTHR44273	PANTHER:PTHR44273:SF5	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc10g007000.2	EnsemblPlants:Solyc10g007000.2.1
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276AFC0	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:1404113..1409238

Molecular Weight (calculated)

72838.5 Da

IEP (calculated)

7.108

GRAVY (calculated)

-0.438

Length

667 amino acids

Sequence
(BLAST)

001: METHKQVAAY VSENSKKRVF PGGSAIDVEV VEISRPTNWS SKSKTPKQHK KVSFHEIIDV DVEENLSDVK RSSGNVKFSG KGKDILVGNG SSGNSGPVDA
101: VQSSKKNCFS SSIKKKNCLS ASNSPIIIDE FGSDVLFGAD EHMDMYYDDL VYSDYAVLQA HFDNMDIPPG VEAPIPWMPG PMEEQMVSTT TSTSGRDVPG
201: AVRNQSASFS SSTLVGQPTQ FGSSWSSPGP ALGKEGQLVI GNSNEKSSKG VSNSKKIHSS GGTASFDWNN PYNMYEGSSS HYGKKLRSSG ATTSYGSGNQ
301: TTPIGPYFPN SVGGPVSDMK NLFLNPTTPI AAGITHASPA MMNYFPLSLH KGATTAGCPS IPSGPACNGE QHRNVDEILK NFQAFKKFDT VEDHSDHFYS
401: RQASSGNLPS KNWAKKIQEE WKILENDLPD TIFVRVYESR MDLLRAVIMG ADGTPYHDGL YFFDVFFPSN YPNVPPLVHY HSFGLRINPN LYNCGKVCLS
501: LLNTWTGQGK EKWIPRASTM LQVLVSIQGL ILNAKPYFNE PGYANTGGTA RGDQSSLQYN ENTYILNLKT MVFSMRRPPK YFEDFVLGHF FRSAQDILVA
601: CKAYTDGAQV GSLVRGGVQD VDEGDKSCSP TFKASLAGFI KTVIDTFKEI GVKDCDKFLH LTQNGTE

Best Arabidopsis Sequence Match ( AT1G53025.1 )
(BLAST)

001: MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN
101: QPIDVDDYSM YQDVLDPKDV PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI YSSVSFSAVQ PQTPDVVMVT
201: NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM
301: DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP
401: GYVQSAGTAS GESKSKVYSE NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL EEARQSGSKK FKTDVASFMQ
501: TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR SSR

Arabidopsis Description

Ubiquitin-conjugating enzyme family protein [Source:TAIR;Acc:AT1G53025]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.